CX069753

Overview
NameCX069753
Unique NameCX069753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SACHY (30S ribosomal protein S16, chloroplastic OS=Saccharum hybrid GN=rps16 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.825e-22
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q A+YRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV+DI +KA  F +
Sbjct:   13 QQAIYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAEFFKD 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_MAIZE (30S ribosomal protein S16, chloroplastic OS=Zea mays GN=rps16 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.825e-22
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q A+YRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV+DI +KA  F +
Sbjct:   13 QQAIYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAEFFKD 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_JASNU (30S ribosomal protein S16, chloroplastic OS=Jasminum nudiflorum GN=rps16 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.825e-22
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVY+IVAID RS REG+ LRKVGFYDPI NQT LNV AILYFL KGAQPTGTV DI +KA +  E+  NQTKF
Sbjct:   13 QRAVYQIVAIDVRSPREGKALRKVGFYDPIKNQTDLNVRAILYFLEKGAQPTGTVQDILKKAEIDKELRPNQTKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_AMBTC (30S ribosomal protein S16, chloroplastic OS=Amborella trichopoda GN=rps16 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.153e-21
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVF 257
            Q  +YRIVAID RSRR+GR LRKVGFYDPI NQT+ NVPAILYFL KGAQPT TVHDIS+KA VF
Sbjct:   13 QRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTVTVHDISKKAEVF 77          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_PHAAO (30S ribosomal protein S16, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps16 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.568e-21
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284
            Q A+YRIVAID RSRREGRDL+KVGFYDPI NQT+ NVPAILYFL KGAQPT TV+DI +K   F E  ++  K
Sbjct:   13 QRAIYRIVAIDVRSRREGRDLQKVGFYDPIKNQTYSNVPAILYFLEKGAQPTETVYDILRKTEFFKEFRISFDK 86          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_ARATH (30S ribosomal protein S16, chloroplastic OS=Arabidopsis thaliana GN=rps16 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.568e-21
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q AVYRI+AID R RREGRDL KVGFYDPI NQT LN+ AIL FL KGAQPT T HDIS+KAG+FTE
Sbjct:   13 QRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKGAQPTRTAHDISKKAGIFTE 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_HUPLU (30S ribosomal protein S16, chloroplastic OS=Huperzia lucidula GN=rps16 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEV 266
            Q A YRIVAID RSR  GR +++VG YDPI +QT  N+P I+YF+ +GAQPT TV DI QKA +F ++
Sbjct:   13 QQATYRIVAIDARSRGXGRAIQEVGSYDPIKDQTQXNMPTIVYFIERGAQPTETVKDILQKAEIFAQL 80          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_STAPU (30S ribosomal protein S16, chloroplastic OS=Staurastrum punctulatum GN=rps16 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.591e-15
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVF 257
            YRI+AID R RR+G+ L++VGFYDP+ ++T LNVPAIL  L  GAQPT TV  I QKAGVF
Sbjct:   17 YRIIAIDVRCRRDGKALKEVGFYDPLKDKTQLNVPAILTLLQHGAQPTDTVSHILQKAGVF 77          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_ZYGCR (30S ribosomal protein S16, chloroplastic OS=Zygnema circumcarinatum GN=rps16 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.365e-14
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEV 266
            YRI+AID +SRR+GR L++VGFYDP  +QTHL+V  I+ F+ +GAQPT TV  I  +AGVF ++
Sbjct:   17 YRIIAIDVKSRRQGRALKEVGFYDPRKDQTHLDVATIITFIQQGAQPTDTVSHILNRAGVFEQI 80          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_ANTFO (30S ribosomal protein S16, chloroplastic OS=Anthoceros formosae GN=rps16 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLN 275
            YRIVAID +SRREGR L +VGFY+   +QT L++ AI+  + +GAQPT TV+DI +KAG+F  +  N
Sbjct:   17 YRIVAIDAQSRREGRALEEVGFYNLRKDQTQLDILAIVNLIREGAQPTETVYDILRKAGIFERIKAN 83          
The following BLAST results are available for this feature:
BLAST of CX069753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RR16_SACHY8.825e-2279.1030S ribosomal protein S16, chloroplastic OS=Saccha... [more]
RR16_MAIZE8.825e-2279.1030S ribosomal protein S16, chloroplastic OS=Zea ma... [more]
RR16_JASNU8.825e-2273.3330S ribosomal protein S16, chloroplastic OS=Jasmin... [more]
RR16_AMBTC1.153e-2180.0030S ribosomal protein S16, chloroplastic OS=Ambore... [more]
RR16_PHAAO2.568e-2170.2730S ribosomal protein S16, chloroplastic OS=Phalae... [more]
RR16_ARATH2.568e-2177.6130S ribosomal protein S16, chloroplastic OS=Arabid... [more]
RR16_HUPLU1.612e-1558.8230S ribosomal protein S16, chloroplastic OS=Huperz... [more]
RR16_STAPU3.591e-1565.5730S ribosomal protein S16, chloroplastic OS=Staura... [more]
RR16_ZYGCR1.365e-1457.8130S ribosomal protein S16, chloroplastic OS=Zygnem... [more]
RR16_ANTFO1.970e-1355.2230S ribosomal protein S16, chloroplastic OS=Anthoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F01-L2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069753 ID=CX069753; Name=CX069753; organism=Citrus sinensis; type=EST; length=868bp
CCGTACGAGGAGAAAACTTCTTATACGTTTCTAGGGGGGGTACTGTTCAT
CTATATCTATCCCAATGAGCCGTTTATCGAATCGTTGCAATTGATGGTCG
ATCCCGAAGAGAAGGAAGAGATCTTCGGAAAGTGGGTTTTTATGATCCGA
TAAATAATCAAACCCATTTAAATGTTCCTGCTATTCTATATTTCCTTGCC
AAGGGCGCTCAACCTACAGGAACCGTTCATGATATTTCACAGAAAGCGGG
GGTTTTTACAGAAGTTAGTCTTAATCAAACGAAATTCTATTAAGGAATAG
AACAAAAAAGAGGGTGTGGATGCGCTTTATCTAGTTTTGTATAATTTTTT
CTTTACTATCCCCCCTTTTGTTCTATTCAGACCTATTTCTTTTCGGTTTT
TTTTTGAAGTCTTTCTCTAAAACTCTAAAAAAGTATTCTTAAAGTTTTTT
ATTTATCTAATTCTTTAGATATTATTTATTAATTTCCATATTTATTATAT
CTATTTATTAATATATAATTTGATTTGTTATTTGGATTTGAATTCAATTT
AATAAATAACCAATTAACTCTTTTTGTTTTTGTTATTGTATGTTTTTAGT
ATTTTCTCAATCTTGCTATTCAATATTCAATGTCATATTGACAATATTGT
AGTGAACAAATATAATTTTCTCATGGAGAAATGGGCCCATTTATCTCCGT
TCCATAGGTTTTGGTTGTCTTTTTTTTATGTTCAAAATCGATTAGAAATT
TTTTTGATTCGAGTTCTTGCTAATTTCATTTTTTGATTCCGTTTTGAAAT
TCCTTTTTTTTTTTTATTTTTTTTTATTCCGATTCTATCTACCCATTCGA
ATTATTTGGGTTGCTAAC
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