CX069753

Overview
NameCX069753
Unique NameCX069753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_MESVI (30S ribosomal protein S16, chloroplastic OS=Mesostigma viride GN=rps16 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.390e-13
Identity = 34/66 (51.52%), Postives = 51/66 (77.27%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSL 272
            YR++AID R RR+G+ L+++GFYDPI  +T L+VP I+++L  GAQ + TV ++ QKA VF ++SL
Sbjct:   17 YRVIAIDSRCRRDGKALKELGFYDPIAGKTQLDVPNIIFYLKAGAQTSETVGNLLQKAKVFNQLSL 82          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RS16_CYAA5 (30S ribosomal protein S16 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.488e-13
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVS 269
            YRIVAI+  SRR+GR L ++GFY+P  ++T LNVPAI+  L +GAQPT TV  I +KA VF +V+
Sbjct:   17 YRIVAINSASRRDGRPLEELGFYNPRTDETRLNVPAIVTRLKQGAQPTETVRSILEKAKVFEQVN 81          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RS16_CYAP8 (30S ribosomal protein S16 OS=Cyanothece sp. (strain PCC 8801) GN=rpsP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.779e-13
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVS 269
            YRIVAI+  SRR+GR L ++GFY+P  ++T LNVP I+  L +GAQPT TV  I QKA VF +V+
Sbjct:   17 YRIVAINSSSRRDGRPLEELGFYNPRTDETRLNVPGIVKRLKEGAQPTETVRSILQKAQVFEQVN 81          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RS16_CYAP7 (30S ribosomal protein S16 OS=Cyanothece sp. (strain PCC 7424) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.179e-12
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVS 269
            YRIVA+   SRR+GR L ++GFY+P  ++T LNVPAI+  L  GAQPT TV +I QKA VF +V+
Sbjct:   17 YRIVAMRSTSRRDGRPLEELGFYNPRTDETRLNVPAIVKRLQDGAQPTETVRNILQKAKVFEQVN 81          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_CHAGL (30S ribosomal protein S16, chloroplastic OS=Chaetosphaeridium globosum GN=rps16 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.081e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEV 266
            YRI+AID ++RREG+ L+++GFY+PI N   L+V  I+ FL  GA+PT TV DI  K  VF ++
Sbjct:   17 YRIIAIDAKNRREGKALKELGFYNPIKNSIQLDVQNIILFLKNGAKPTDTVFDILNKHQVFEQM 80          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RS16_NOSP7 (30S ribosomal protein S16 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   69 AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVS 269
            A YRIVAI+  +RR+GR L ++GFY+P  ++  L+VP I+  L +GAQPT TV  I  KA VF +VS
Sbjct:   15 ASYRIVAINNLARRDGRPLEELGFYNPRTDEVRLDVPGIVKRLQQGAQPTDTVRRILVKANVFEQVS 81          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RS16_ANAVT (30S ribosomal protein S16 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   69 AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVS 269
            A YRIVA++  SRR+GR L ++G+Y+P  ++  L+VP I+  L +GAQPT TV  I QK  VF +VS
Sbjct:   15 ASYRIVAMNNLSRRDGRPLEELGYYNPRTDEVRLDVPGIVKRLQQGAQPTDTVRRILQKQNVFEQVS 81          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RS16_ANASP (30S ribosomal protein S16 OS=Anabaena sp. (strain PCC 7120) GN=rpsP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   69 AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVS 269
            A YRIVA++  SRR+GR L ++G+Y+P  ++  L+VP I+  L +GAQPT TV  I QK  VF +VS
Sbjct:   15 ASYRIVAMNNLSRRDGRPLEELGYYNPRTDEVRLDVPGIVKRLQQGAQPTDTVRRILQKQNVFEQVS 81          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RS16_SYNP6 (30S ribosomal protein S16 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEV 266
            YRIVA +  SRR+G  L ++GFY+P  N+T L+VPAI+  L +GAQPT TV  I +KA +F ++
Sbjct:   17 YRIVATNSTSRRDGLPLEELGFYNPRTNETRLDVPAIVRRLQQGAQPTETVRSILRKAQIFEQL 80          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RS16_SYNE7 (30S ribosomal protein S16 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   75 YRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEV 266
            YRIVA +  SRR+G  L ++GFY+P  N+T L+VPAI+  L +GAQPT TV  I +KA +F ++
Sbjct:   17 YRIVATNSTSRRDGLPLEELGFYNPRTNETRLDVPAIVRRLQQGAQPTETVRSILRKAQIFEQL 80          
The following BLAST results are available for this feature:
BLAST of CX069753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RR16_MESVI4.390e-1351.5230S ribosomal protein S16, chloroplastic OS=Mesost... [more]
RS16_CYAA57.488e-1356.9230S ribosomal protein S16 OS=Cyanothece sp. (strai... [more]
RS16_CYAP89.779e-1356.9230S ribosomal protein S16 OS=Cyanothece sp. (strai... [more]
RS16_CYAP72.179e-1256.9230S ribosomal protein S16 OS=Cyanothece sp. (strai... [more]
RR16_CHAGL1.081e-1151.5630S ribosomal protein S16, chloroplastic OS=Chaeto... [more]
RS16_NOSP75.366e-1152.2430S ribosomal protein S16 OS=Nostoc punctiforme (s... [more]
RS16_ANAVT7.008e-1150.7530S ribosomal protein S16 OS=Anabaena variabilis (... [more]
RS16_ANASP7.008e-1150.7530S ribosomal protein S16 OS=Anabaena sp. (strain ... [more]
RS16_SYNP69.153e-1151.5630S ribosomal protein S16 OS=Synechococcus sp. (st... [more]
RS16_SYNE79.153e-1151.5630S ribosomal protein S16 OS=Synechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F01-L2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069753 ID=CX069753; Name=CX069753; organism=Citrus sinensis; type=EST; length=868bp
CCGTACGAGGAGAAAACTTCTTATACGTTTCTAGGGGGGGTACTGTTCAT
CTATATCTATCCCAATGAGCCGTTTATCGAATCGTTGCAATTGATGGTCG
ATCCCGAAGAGAAGGAAGAGATCTTCGGAAAGTGGGTTTTTATGATCCGA
TAAATAATCAAACCCATTTAAATGTTCCTGCTATTCTATATTTCCTTGCC
AAGGGCGCTCAACCTACAGGAACCGTTCATGATATTTCACAGAAAGCGGG
GGTTTTTACAGAAGTTAGTCTTAATCAAACGAAATTCTATTAAGGAATAG
AACAAAAAAGAGGGTGTGGATGCGCTTTATCTAGTTTTGTATAATTTTTT
CTTTACTATCCCCCCTTTTGTTCTATTCAGACCTATTTCTTTTCGGTTTT
TTTTTGAAGTCTTTCTCTAAAACTCTAAAAAAGTATTCTTAAAGTTTTTT
ATTTATCTAATTCTTTAGATATTATTTATTAATTTCCATATTTATTATAT
CTATTTATTAATATATAATTTGATTTGTTATTTGGATTTGAATTCAATTT
AATAAATAACCAATTAACTCTTTTTGTTTTTGTTATTGTATGTTTTTAGT
ATTTTCTCAATCTTGCTATTCAATATTCAATGTCATATTGACAATATTGT
AGTGAACAAATATAATTTTCTCATGGAGAAATGGGCCCATTTATCTCCGT
TCCATAGGTTTTGGTTGTCTTTTTTTTATGTTCAAAATCGATTAGAAATT
TTTTTGATTCGAGTTCTTGCTAATTTCATTTTTTGATTCCGTTTTGAAAT
TCCTTTTTTTTTTTTATTTTTTTTTATTCCGATTCTATCTACCCATTCGA
ATTATTTGGGTTGCTAAC
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