CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4307 contig Csv1_Contig4307:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.047e-41
Identity = 87/166 (52.41%), Postives = 115/166 (69.28%), Query Frame = -3
Query:  119 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNS--DAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 610
            + +DGK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR S+F +V+RWL+EL  H D  +  MLVGNK DL  +  V T+EGK+ AE E L+FMETSAL+STNVE AF  V+ +IY  +S++ + +  DA        ++ +  D +   KG      CC+
Sbjct:   56 LQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINIKDDVSAVKKG-----GCCS 216          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.341e-40
Identity = 90/165 (54.55%), Postives = 111/165 (67.27%), Query Frame = -3
Query:  119 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNR-VTLVKDGANSSKGSMMDFSCCA 610
            + +D K VKAQIWDTAGQER+RA+TSAYYRGAVGALVVYDITR  +F +V+RWL+EL  H D  +  MLVGNK DL  +R VSTE+ K+ AE E  FFMETSAL+S NVE AF  V+ EIY  + RK L      A L   + + + KD  ++ K       CC+
Sbjct:   56 IRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVGKDDVSAVK----KVGCCS 216          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC2_ORYSJ8.047e-4152.41Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11A_RAT1.793e-4057.55Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT1.793e-4057.55Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB1.793e-4057.55Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG1.793e-4057.55Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE1.793e-4057.55Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN1.793e-4057.55Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK1.793e-4057.55Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA1.793e-4057.55Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11B_TOBAC2.341e-4054.55Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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