CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.812e-40
Identity = 86/167 (51.50%), Postives = 113/167 (67.66%), Query Frame = -3
Query:  119 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSV---NRVTLVKDGANSSKGSMMDFSCCA 610
            ++ID K +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  ++ +V RWL+EL  H D  +  ML+GNK DL  +  VST+E K LAE EGL+FMETSAL++TNVE AF   + +IY  +S+K + +    A  S         +KD  +S K     F CC+
Sbjct:   55 LNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWK----KFGCCS 217          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.812e-40
Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = -3
Query:  230 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 616
            + + +DGK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TRR++F +V RWL+EL  H D  +  MLVGNK DL  +  V TE+GKS AE+E L FMETSAL++TNVE AF  V+ +IY   S+K
Sbjct:   53 RTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKK 181          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.897e-40
Identity = 77/131 (58.78%), Postives = 104/131 (79.39%), Query Frame = -3
Query:  218 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNS 610
            ++IDGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR ++F +  RWL+EL  H D  +  ML+GNK DL  +  VSTE+GK+ AE+E L+FMETSAL++TNVE AF  V+ +IY  +S++ + +
Sbjct:   55 LNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEA 185          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 8.897e-40
Identity = 79/139 (56.83%), Postives = 108/139 (77.70%), Query Frame = -3
Query:  194 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+ GL F+ETSALD TNVEAAF+ ++ EIY  +S+K + SD  + ++S
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.162e-39
Identity = 85/169 (50.30%), Postives = 117/169 (69.23%), Query Frame = -3
Query:  119 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL---NSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 616
            + +++D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TRR++F +  RWL+EL  H D  +  ML+GNK DL  +  V TE+GKS AE E L+FMETSAL++TNVE AF  V+ +IY  +S++ +   +S +     S  +   VK+ ++  K     F CC+
Sbjct:   53 KTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLK----RFGCCS 217          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.162e-39
Identity = 83/163 (50.92%), Postives = 112/163 (68.71%), Query Frame = -3
Query:  119 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTL-VKDGANSSKGSMMDFSCCA 604
            ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL++YD+TR ++F +  RWL EL  H D  +  ML+GNKCDL  +  V TEE K+ AE E L+FMETSALD+TNVE AF  V+ +I+  +S++ ++     A+L     T+ VK+  +  K       CC+
Sbjct:   57 VEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLK----RMGCCS 215          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.518e-39
Identity = 84/168 (50.00%), Postives = 113/168 (67.26%), Query Frame = -3
Query:  122 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK-----DGANSSKGSMMDFSCC 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D  +  MLVGNK DL  +R V T+E ++ AE+  L F+ETSALDSTNVE AF+ ++ EIY  +S+K ++  +   E   N V  +      DG  S+K       CC
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSAHDESPGNNVVDISVPPTTDGQKSNK-----LQCC 215          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.518e-39
Identity = 83/166 (50.00%), Postives = 117/166 (70.48%), Query Frame = -3
Query:  119 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAEL--SVNRVTLVKDGANSSKGSMMDFSCCA 610
            +++D K +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR S+F +V+ WL+EL  H D  +  MLVGNK DL  +  V TE+ KS AE+E L+FMETSAL++TNVE AF  V+ +I+  +S+K + + +  A +    +++ + KD +   KG      CC+
Sbjct:   55 LNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIGKDVSAVKKG-----GCCS 215          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 161.77 bits (408), Expect = 2.589e-39
Identity = 81/163 (49.69%), Postives = 109/163 (66.87%), Query Frame = -3
Query:  122 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+  L F+ETSALDSTNVE AF+ ++ EIY  +S+K +   A   E   N V  +     +         CC
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 161.77 bits (408), Expect = 2.589e-39
Identity = 81/163 (49.69%), Postives = 109/163 (66.87%), Query Frame = -3
Query:  122 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+  L F+ETSALDSTNVE AF+ ++ EIY  +S+K +   A   E   N V  +     +         CC
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT3_NICPL6.812e-4051.50Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RAA1B_ARATH6.812e-4062.79Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11E_LOTJA8.897e-4058.78Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11A_BOVIN8.897e-4056.83Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RB11D_LOTJA1.162e-3950.30Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH1.162e-3950.92Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11B_DISOM1.518e-3950.00Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RAA1C_ARATH1.518e-3950.00Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11B_RAT2.589e-3949.69Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_HUMAN2.589e-3949.69Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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