CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.589e-39
Identity = 81/163 (49.69%), Postives = 109/163 (66.87%), Query Frame = -3
Query:  122 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+  L F+ETSALDSTNVE AF+ ++ EIY  +S+K +   A   E   N V  +     +         CC
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.381e-39
Identity = 77/130 (59.23%), Postives = 102/130 (78.46%), Query Frame = -3
Query:  215 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 604
            I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +F+ + RWLEEL  H D  +  ML+GNK DL+  R V TE+ K  A++EGLFF+ETSA+++TN+E AF  V+ EI++ +++K L +D
Sbjct:   59 IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAAD 188          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.381e-39
Identity = 81/163 (49.69%), Postives = 109/163 (66.87%), Query Frame = -3
Query:  122 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  ++ +V+RWL+EL  H D+ +  MLVGNK DL  +R V T+E ++ AE+  L F+ETSALDSTNVE AF+ ++ EIY  +S+K +   A   E   N V  +     +         CC
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQRPNKLQCC 215          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.415e-39
Identity = 80/161 (49.69%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  122 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 604
            +D K++KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT++SSF++V RWL+EL  H D+ +  MLVGNK DL  +R VSTEE ++ A E  L F+ETSA+D++NVE AF+ V+ EI+  +S + L +       +  +   +    N          CC
Sbjct:   54 LDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSSQCC 214          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 81/156 (51.92%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  122 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 589
            VKAQIWDTAG ER+RA+TSAYYRGAVGAL+V+D+T+  ++  V+RWL+EL  H +  +  MLVGNK DL   R+V TEE +  AE  GL F+ETSALDSTNVE AFE V++EI++ +S++  NS      +  N +TL    A    G     +CC
Sbjct:   61 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNS------IRTNAITLGSAQAGQEPGPGEKRACC 210          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.285e-38
Identity = 80/156 (51.28%), Postives = 105/156 (67.31%), Query Frame = -3
Query:  122 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 589
            VKAQIWDTAG ER+RA+TSAYYRGAVGAL+V+D+T+  ++  V+RWL+EL  H +  +  MLVGNK DL   R+V TEE +  AE  GL F+ETSALDSTNVE AFE V++EI++ +S+++ NS         N + L    A    G     +CC
Sbjct:   61 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNSP------RSNAIALGSAQAGQEPGPGQKRACC 210          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.738e-38
Identity = 76/130 (58.46%), Postives = 100/130 (76.92%), Query Frame = -3
Query:  215 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 604
            I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +F+ + RWLEEL  H D  +  ML GNK DL+  R V TE+ K  A++EGLFF+ETSA+++T +E AF  V+ EI++ +++K L +D
Sbjct:   59 IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAAD 188          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.882e-38
Identity = 80/156 (51.28%), Postives = 105/156 (67.31%), Query Frame = -3
Query:  122 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 589
            +KAQIWDTAG ER+RA+TSAYYRGAVGAL+V+D+T+  ++  V+RWL+EL  H +  +  MLVGNK DL   R+V TEE +  AE  GL F+ETSALDSTNVE AFE V++EI++ +S++  N+         N VTL    A    G     +CC
Sbjct:   61 IKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNN------ARTNAVTLGSGPAGQELGPGEKRACC 210          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.088e-37
Identity = 78/170 (45.88%), Postives = 117/170 (68.82%), Query Frame = -3
Query:  119 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSV----NRVTLVKDGANSSKGSMMDFSCCA 616
            + + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+ YDIT+R +F++V+RWL EL  H D+ +  +L GNK DL  +R VS ++ ++L ++EGL F+ETSAL++ NV+ AF+ ++ +IY  IS+K L +    A  ++      + +  + AN  +G      CC+
Sbjct:   52 RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRG------CCS 215          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.423e-37
Identity = 80/156 (51.28%), Postives = 104/156 (66.67%), Query Frame = -3
Query:  122 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 589
            VKAQIWDTAG ER+RA+TSAYYRGAVGAL+V+D+T+  ++  V+RWL+EL  H +  +  MLVGNK DL   R+V TEE    AE  GL F+ETSALDSTNVE AF+ V++EI++ +S++  NS    A      +TL    A    G     +CC
Sbjct:   61 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQNSTRTSA------ITLGNAQAGQDPGPGEKRACC 210          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_BOVIN2.589e-3949.69Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11D_TOBAC3.381e-3959.23Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11B_MOUSE3.381e-3949.69Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
YPT3_SCHPO4.415e-3949.69GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB25_HUMAN7.532e-3951.92Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_RABIT1.285e-3851.28Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RB11C_TOBAC3.738e-3858.46Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB25_BOVIN4.882e-3851.28Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RB11A_TOBAC1.088e-3745.88Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB25_MOUSE2.423e-3751.28Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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