CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.807e-15
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = -3
Query:  242 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREIYSN 589
            V+ Q+WD AGQERF  +T  YY+ AVGALVV+DI+R S F +V +W  +L +       + +  +L+ NKCD       +  +     +E G   + ETSA D+ N++ A   ++  I +N
Sbjct:   77 VRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILAN 197          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = -3
Query:  257 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTA-VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 604
            ID +     I DTAGQ+   A+   + R   G ++VY +T RSSF+ V+ + E++    D   V  M++GNK DLD  R V+ +EGK LA   G+ FME SA    NVE  F   +R
Sbjct:   53 IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEEVFNETVR 169          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = -3
Query:  257 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTA-VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 604
            ID +     I DTAGQ+   A+   + R   G ++VY +T RSSF+ +  + E++    D+  V  M++GNK DLD  R V+ +EGK LA   G+ FME SA   +N+E  F   +R
Sbjct:   52 IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVR 168          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASN_PIG (GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -3
Query:  215 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 610
            V IDG+     I DTAGQE + A+   Y R   G L V+ I    SF  +  + E++    D+  V  +LVGNKCDL + R V T++   LA+  G+ F+ETSA     VE AF  ++REI     +K+ +SD
Sbjct:   44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSD 175          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASN_MONDO (GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -3
Query:  215 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 610
            V IDG+     I DTAGQE + A+   Y R   G L V+ I    SF  +  + E++    D+  V  +LVGNKCDL + R V T++   LA+  G+ F+ETSA     VE AF  ++REI     +K+ +SD
Sbjct:   44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSD 175          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASN_HUMAN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -3
Query:  215 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 610
            V IDG+     I DTAGQE + A+   Y R   G L V+ I    SF  +  + E++    D+  V  +LVGNKCDL + R V T++   LA+  G+ F+ETSA     VE AF  ++REI     +K+ +SD
Sbjct:   44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSD 175          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  251 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTA-VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 604
            ID ++V   + DTAGQE + A+   Y R   G L+VY I   +SF  +  + +++    D+  V  ++VGNKCDL+  R VS E+G +LA      F+ETSA    NVE AF  ++R I
Sbjct:   47 IDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAP1B_PONAB (Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB32_PIG5.807e-1536.36Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]
RP1BL_HUMAN7.584e-1537.70Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RASY_DICDI7.584e-1540.17Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RASX_DICDI7.584e-1538.46Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RASN_PIG7.584e-1539.10GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1[more]
RASN_MONDO7.584e-1539.10GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 ... [more]
RASN_HUMAN7.584e-1539.10GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1[more]
RAS1_CANAL7.584e-1539.50Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RAP1B_RAT7.584e-1537.70Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAP1B_PONAB7.584e-1537.70Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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