CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4307 contig Csv1_Contig4307:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A+++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL+S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY  I   V  +N++A   ++           A +  G      CC
Sbjct:   45 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A+++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL+S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY  I   V  +N++A   ++           A +  G      CC
Sbjct:   45 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A+++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL+S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY  I   V  +N++A   ++           A +  G      CC
Sbjct:   45 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A+++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL+S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY  I   V  +N++A   ++           A +  G      CC
Sbjct:   45 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.049e-37
Identity = 77/168 (45.83%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A+++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL+S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY  I   V  +N++A   ++            ++  G      CC
Sbjct:   45 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.049e-37
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A+++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL+S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY  I   V  +N++A   ++           A +  G      CC
Sbjct:   45 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATLAGNQGGQQAGGGCC 212          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.207e-37
Identity = 77/168 (45.83%), Postives = 106/168 (63.10%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A+++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL+S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY  I   V  +N++A   ++             +  G      CC
Sbjct:   45 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGGNQGGQQAGGGCC 212          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.207e-37
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A+++ IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H ++ +  ML+GNK DL+S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY  I   V  +N++A   ++           A +  G      CC
Sbjct:   45 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHGATNATHAGNQGGQQAGGGCC 212          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 71/128 (55.47%), Postives = 100/128 (78.12%), Query Frame = -3
Query:  233 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 616
            + +  +GK +KAQ+WDTAGQER+RA+TSAYYRGAVGAL+VYDI +++++ SV+RW+ EL  + D  +  MLVGNK DL  +R+VST+E K  +E+  L F+ETSALDS+NVE AF+ ++ +IY  +SR
Sbjct:   53 RTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSR 180          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 77/168 (45.83%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  122 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV--LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 619
            A++++IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H +  +  ML+GNKCDL   R V+TEEG+  A+E GL F+ETSA  + NVE AF    +EIY  I   V  +++++Y  ++           A   +G     S C
Sbjct:   45 ARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGEGDARKSSSC 212          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_PONAB4.133e-3746.43Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MACFA4.133e-3746.43Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN4.133e-3746.43Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CANFA4.133e-3746.43Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_MOUSE7.049e-3745.83Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_CHICK7.049e-3746.43Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_RAT9.207e-3745.83Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT9.207e-3746.43Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RB11A_DICDI2.051e-3655.47Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
YPTV4_VOLCA2.679e-3645.83GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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