CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAP1B_PANTR (Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAP1B_MOUSE (Ras-related protein Rap-1b OS=Mus musculus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAP1B_MACFA (Ras-related protein Rap-1b OS=Macaca fascicularis GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAP1B_CHICK (Ras-related protein Rap-1b OS=Gallus gallus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAP1B_BOVIN (Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 610
            V++D ++   +I DTAG E+F A+   Y +   G  +VY IT +S+FN ++   E++    DT  V  +LVGNKCDL+  R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = -3
Query:  242 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGR----MLVGNKCDLD--SIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSN 610
            V  D +    QIWDTAGQERF+++  A+YRGA   ++V+D+    SF+++  W EE       +       +++GNK D+D  + R VS ++ K+    +G + + ETSA +  NV+AAFE + R    N
Sbjct:   50 VQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKN 179          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 41/122 (33.61%), Postives = 73/122 (59.84%), Query Frame = -3
Query:  263 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTH---CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 619
            ++++ +D   +K QIWDT GQERFR++ S +Y+G+ G ++ +D+T   SF ++  W +++       + +   +++GNK DL+  R VS E      +E+ + + E SA +  NV  AFEV+
Sbjct:   47 SKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLED-RKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVL 167          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 50/155 (32.26%), Postives = 82/155 (52.90%), Query Frame = -3
Query:  155 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGR----MLVGNKCDLDSIRDVSTEEGKSL---AEEEGLF-FMETSALDSTNVEAAFEVVIREIYSNIS--RKVLNSDAYKAELSVNRVTLVKDGANS 589
            V+ Q+WD AGQERF  +T  YYR A+GA +V+D+TR ++F +V +W  +L +      G+    +L+ NKCD    +DV    G  +    +E G   + ETSA ++ N++ A   +++ I +N     + +  D  K  L+  +V      A S
Sbjct:   59 VRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQG--KDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLMESIEPDVVKPHLTSTKVASCSGCAKS 211          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASN_MOUSE (GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.905e-15
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -3
Query:  215 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 610
            V IDG+     I DTAGQE + A+   Y R   G L V+ I    SF  +  + E++    D+  V  +LVGNKCDL + R V T++   LA+  G+ F+ETSA     VE AF  ++REI     +K+ +SD
Sbjct:   44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRLKKLNSSD 175          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_PANTR7.584e-1537.70Ras-related protein Rap-1b OS=Pan troglodytes GN=R... [more]
RAP1B_MOUSE7.584e-1537.70Ras-related protein Rap-1b OS=Mus musculus GN=Rap1... [more]
RAP1B_MACFA7.584e-1537.70Ras-related protein Rap-1b OS=Macaca fascicularis ... [more]
RAP1B_HUMAN7.584e-1537.70Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
RAP1B_CHICK7.584e-1537.70Ras-related protein Rap-1b OS=Gallus gallus GN=RAP... [more]
RAP1B_BOVIN7.584e-1537.70Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B ... [more]
RAB7_GOSHI7.584e-1536.15Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RAB7B_MOUSE7.584e-1533.61Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB38_HUMAN7.584e-1532.26Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RASN_MOUSE9.905e-1539.10GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
back to top