CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASH_RAT (GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  227 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 610
            V IDG+     I DTAGQE + A+   Y R   G L V+ I    SF  + ++ E++    D+  V  +LVGNKCDL + R V + + + LA   G+ ++ETSA     VE AF  ++REI  +  RK+
Sbjct:   44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  227 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 610
            V IDG+     I DTAGQE + A+   Y R   G L V+ I    SF  + ++ E++    D+  V  +LVGNKCDL + R V + + + LA   G+ ++ETSA     VE AF  ++REI  +  RK+
Sbjct:   44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  227 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 610
            V IDG+     I DTAGQE + A+   Y R   G L V+ I    SF  + ++ E++    D+  V  +LVGNKCDL + R V + + + LA   G+ ++ETSA     VE AF  ++REI  +  RK+
Sbjct:   44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 43/123 (34.96%), Postives = 74/123 (60.16%), Query Frame = -3
Query:  257 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGR----MLVGNKCDLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 610
            V +D + V  QIWDTAGQERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK DL++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct:   50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 43/123 (34.96%), Postives = 74/123 (60.16%), Query Frame = -3
Query:  257 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGR----MLVGNKCDLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 610
            V +D + V  QIWDTAGQERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK DL++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct:   50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 43/123 (34.96%), Postives = 74/123 (60.16%), Query Frame = -3
Query:  257 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGR----MLVGNKCDLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 610
            V +D + V  QIWDTAGQERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK DL++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct:   50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 43/123 (34.96%), Postives = 74/123 (60.16%), Query Frame = -3
Query:  257 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGR----MLVGNKCDLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 610
            V +D + V  QIWDTAGQERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK DL++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct:   50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 43/123 (34.96%), Postives = 74/123 (60.16%), Query Frame = -3
Query:  257 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGR----MLVGNKCDLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 610
            V +D + V  QIWDTAGQERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK DL++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct:   50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 54/148 (36.49%), Postives = 74/148 (50.00%), Query Frame = -3
Query:  164 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDL---DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI--YSNISRKVLNSDAYKAELSVNRVTLVKDG 592
            EV   IWDTAG ER++AV  +YYR A  A+V YD+T R S+  V  W EELT + +  +   +VG K DL     I+ V  EE K  A        ETS+    NV   F+ +  +    +N     +NS+     ++VN  T  K G
Sbjct:   54 EVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEELTQN-EPEIEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRTGENVSLLFQTIAEDFCKRTNNGTNPVNSNPSNV-VNVNTQTQKKKG 199          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = -3
Query:  251 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTA-VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 610
            V IDG+     I DTAGQE + A+   Y R   G L V+ I    SF  +  + E++    D+  V  +LVGNKCDL + R V T++ + LA   G+ F+ETSA     V+ AF  ++REI
Sbjct:   44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPT-RTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASH_RAT3.764e-1437.98GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=... [more]
RASH_MSVNS3.764e-1437.98GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RASH_HUMAN3.764e-1437.98GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RAB7A_RAT3.764e-1434.96Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_PONAB3.764e-1434.96Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE3.764e-1434.96Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN3.764e-1434.96Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA3.764e-1434.96Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RAB24_DICDI3.764e-1436.49Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
RASK_ORYLA4.916e-1439.67GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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