CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = -3
Query:  200 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 616
            + V++DGK VK QIWDTAGQERFR +TS+YYRG+ G ++VYD+T + SFN VK WL+E+  +  + V ++LVGNKCDL   R V  +  K  A+   + F+ETSALDSTNVE AF  + R+I  ++S++ LN    K E
Sbjct:   48 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKE 186          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 71/127 (55.91%), Postives = 94/127 (74.02%), Query Frame = -3
Query:  236 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 616
            + V+ DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL E+  +    V ++LVGNKCDL   R VS E GK+LA+E G+ F+ETSA D+TNVE AF  +  EI + ++
Sbjct:   48 RTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMA 174          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = -3
Query:  203 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 616
            + V++DGK++K QIWDTAGQERFR +T+AYYRGA+G + VYDIT   SF+++K W+  +  H  + V RM++GNKCD++  R VS E G+ LA + G+ F+ETSA  S NVE AF  + R+I + +++K+  +   +A
Sbjct:   48 RTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEA 185          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 78/167 (46.71%), Postives = 99/167 (59.28%), Query Frame = -3
Query:  119 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 619
            A++++ID K +K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H +  +  MLVGNKCDL   R VS EEG+  A+E GL FME SA  + NVE AF      IY  I   V +       + V  V   + G   S  S     CC+
Sbjct:   45 ARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYVVPGQSGGAGS--SSQGGGCCS 209          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 77/167 (46.11%), Postives = 97/167 (58.08%), Query Frame = -3
Query:  119 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 619
            A+++ ID K +K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR +FN +  WLE+   H +  +  MLVGNKCDL   R VS EEG+  A+E GL FME SA  + NVE AF      IY  I   V +       + V      + G   S  S     CC+
Sbjct:   45 ARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYAIPGQSGGAGSSSS-QGGGCCS 210          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.122e-33
Identity = 69/127 (54.33%), Postives = 92/127 (72.44%), Query Frame = -3
Query:  230 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 610
            ++ID K + AQ WDTAGQERFRAVTS YYRGAVGA++VYDIT + SF +V RWL EL    +  +  M+VGNK DL+  R+V T+E ++ AE   + F+ETSAL+STNV  +FE ++ +IY  +S K
Sbjct:   52 IEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.728e-33
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  227 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF++++ W+  +  H    V +M++GNKCD++  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +K+
Sbjct:   48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKL 177          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  227 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF++++ W+  +  H    V +M++GNKCD++  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +K+
Sbjct:   48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKL 177          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  227 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF++++ W+  +  H    V +M++GNKCD++  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +K+
Sbjct:   48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKL 177          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  227 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF++++ W+  +  H    V +M++GNKCD++  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +K+
Sbjct:   48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKL 177          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_YEAST1.125e-3451.08GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RIC1_ORYSJ1.470e-3455.91Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB8_DISOM1.470e-3447.83Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB2A_MAIZE3.275e-3446.71Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MAIZE1.244e-3346.11Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RB11C_DICDI2.122e-3354.33Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB8A_BOVIN4.728e-3347.69Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8A_RAT6.176e-3347.69Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE6.176e-3347.69Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA6.176e-3347.69Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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