CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  227 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF++++ W+  +  H    V +M++GNKCD++  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +K+
Sbjct:   48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKL 177          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  227 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF++++ W+  +  H    V +M++GNKCD++  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +K+
Sbjct:   48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKL 177          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.053e-32
Identity = 61/122 (50.00%), Postives = 89/122 (72.95%), Query Frame = -3
Query:  251 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 616
            + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G L+VYD+T   SF S++ W+  +  H   +V +ML+GNKCD+   + V +  GKSLA+E G+ F+ETSA +S NVE AF  + ++I
Sbjct:   55 RTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDI 176          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.376e-32
Identity = 68/135 (50.37%), Postives = 93/135 (68.89%), Query Frame = -3
Query:  212 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 616
            +++++ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRRS++N +  WL +     +     +L+GNK DL++ RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY NI    L+ +A
Sbjct:   51 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNA 185          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.376e-32
Identity = 68/135 (50.37%), Postives = 93/135 (68.89%), Query Frame = -3
Query:  212 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 616
            +++++ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRRS++N +  WL +     +     +L+GNK DL++ RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY NI    L+ +A
Sbjct:   51 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNA 185          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.376e-32
Identity = 68/135 (50.37%), Postives = 93/135 (68.89%), Query Frame = -3
Query:  212 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 616
            +++++ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRRS++N +  WL +     +     +L+GNK DL++ RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY NI    L+ +A
Sbjct:   51 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNA 185          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.376e-32
Identity = 68/135 (50.37%), Postives = 93/135 (68.89%), Query Frame = -3
Query:  212 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 616
            +++++ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRRS++N +  WL +     +     +L+GNK DL++ RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY NI    L+ +A
Sbjct:   51 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNA 185          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 139.428 bits (350), Expect = 1.376e-32
Identity = 68/135 (50.37%), Postives = 93/135 (68.89%), Query Frame = -3
Query:  212 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 616
            +++++ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRRS++N +  WL +     +     +L+GNK DL++ RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY NI    L+ +A
Sbjct:   51 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNA 185          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.376e-32
Identity = 68/135 (50.37%), Postives = 93/135 (68.89%), Query Frame = -3
Query:  212 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 616
            +++++ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRRS++N +  WL +     +     +L+GNK DL++ RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY NI    L+ +A
Sbjct:   51 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNA 185          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.347e-32
Identity = 66/128 (51.56%), Postives = 92/128 (71.88%), Query Frame = -3
Query:  233 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 616
            + ++++ K++KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI++ SS+ +   WL EL  + D  V   L+GNK DL  +R V T+E K+ A E  + F ETSAL+S NV+ AF  +I  I+  +S+
Sbjct:   53 RTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 180          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_HUMAN6.176e-3347.69Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA6.176e-3347.69Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8B_DICDI1.053e-3250.00Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB14_RAT1.376e-3250.37Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.376e-3250.37Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG1.376e-3250.37Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE1.376e-3250.37Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.376e-3250.37Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.376e-3250.37Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
YPT32_YEAST2.347e-3251.56GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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