CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.347e-32
Identity = 61/130 (46.92%), Postives = 91/130 (70.00%), Query Frame = -3
Query:  227 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF +++ W+  +  H    V +M++GNKCD +  R VS E+G+ LA   G+ FMETSA  + N+E AF  + R+I + + +K+
Sbjct:   48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKL 177          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.347e-32
Identity = 65/151 (43.05%), Postives = 98/151 (64.90%), Query Frame = -3
Query:  164 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG 616
            + +++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL+E+  +    V ++LVGNKCDL + + V     K  A+  G+ F+ETSA ++TNVE AF  +  EI   +     +  + K+ +++    +   G
Sbjct:   48 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSG 198          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.003e-32
Identity = 60/122 (49.18%), Postives = 89/122 (72.95%), Query Frame = -3
Query:  251 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 616
            + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G L+VYD+T   SF +++ W+  +  H   +V +ML+GNKCD+   + V +  GKSLA+E G+ F+ETSA +S NVE AF  + ++I
Sbjct:   55 RTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDI 176          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.003e-32
Identity = 71/158 (44.94%), Postives = 104/158 (65.82%), Query Frame = -3
Query:  149 AQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTL-VKDGANSSK 619
            A+++ ID K +K QIWDTAGQE FR++T +YYRG+ GAL+VYDITRR +FN +  WL++  ++ ++ +  +L+GNK D++S R VS EEG+  A+E GL F+ETSA  ++NVE AF     +IY  I          K +  +N  +  +K GA +SK
Sbjct:   44 ARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQ---------KGDFDINNESFGIKLGAPTSK 192          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 66/142 (46.48%), Postives = 98/142 (69.01%), Query Frame = -3
Query:  191 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSV 616
            + V+ DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + SFN+VK+WL E+  +    V ++LVGNK DL + + V+TE  K+ A+E G+ FMETSA ++TNV+ AF  +   I   ++ +   ++A  A + +
Sbjct:   48 RTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQI 189          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 65/122 (53.28%), Postives = 90/122 (73.77%), Query Frame = -3
Query:  251 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 616
            + ++ DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD T   SFN+VK+WL E+  + + +V ++L+GNK D+   + VSTE G++LA+E G+ F+ETSA DS NVE AF  +  EI
Sbjct:   48 RTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEI 169          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = -3
Query:  164 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG 616
            + +++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL+E+  +    V ++LVGNKCDL + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI   +        A K+ + +    + + G
Sbjct:   51 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = -3
Query:  164 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG 616
            + +++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL+E+  +    V ++LVGNKCDL + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI   +        A K+ + +    + + G
Sbjct:   51 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = -3
Query:  164 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG 616
            + +++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL+E+  +    V ++LVGNKCDL + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI   +        A K+ + +    + + G
Sbjct:   51 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = -3
Query:  164 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG 616
            + +++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL+E+  +    V ++LVGNKCDL + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI   +        A K+ + +    + + G
Sbjct:   51 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CHICK2.347e-3246.92Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB1_DISOM2.347e-3243.05Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB8A_DICDI4.003e-3249.18Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB2A_DICDI4.003e-3244.94Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
YPTM2_MAIZE5.228e-3246.48GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RABD1_ARATH5.228e-3253.28Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1A_RAT5.228e-3243.05Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG5.228e-3243.05Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE5.228e-3243.05Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN5.228e-3243.05Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
back to top