CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4307 contig Csv1_Contig4307:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = -3
Query:  164 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG 616
            + +++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL+E+  +    V ++LVGNKCDL + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI   +        A K+ + +    + + G
Sbjct:   51 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 70/166 (42.17%), Postives = 109/166 (65.66%), Query Frame = -3
Query:  122 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLD-SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G L+VYD+T  SSFN+++ W+  +  H    V ++LVGNK D+D S R V T +G++LA+E G+ F ETSA  + NVE  F  + R+I   +S    ++D+ +AE +  +++     A + + +    +CC
Sbjct:   55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLS----DTDS-RAEPATIKISQTDQAAGAGQATQKS-ACC 214          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.828e-32
Identity = 71/167 (42.51%), Postives = 107/167 (64.07%), Query Frame = -3
Query:  122 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLD-SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA-YKAELSVNRVTLVKDGANSSKGSMMDFSCC 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G L+VYD+T  SSFN+++ W+  +  H    V ++LVGNK D+D S R V T +G++LA+E G+ F ETSA  + NVE  F  + R+    I +++ +SD   +A+ S+     +K    S   +    +CC
Sbjct:   55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD----IKQRLADSDTRQEAQPSIT----IKPADQSGNQAAAKSACC 213          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 8.917e-32
Identity = 64/115 (55.65%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  272 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 616
            + V+++GK VK QIWDTAGQERFR +TS+YYRGA G ++VYDIT   SFN+VK+WL+E+  + + +V ++LVGNKCDL   R V T   ++ A+E G+ F+ETSA +S NVE AF
Sbjct:   48 RTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAF 162          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 66/135 (48.89%), Postives = 95/135 (70.37%), Query Frame = -3
Query:  212 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 616
            + V++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL E+  +    V ++LVGNK DL S + V     K+ A+E G+ F+ETSA ++TNVE AF  +  EI + ++ + + + A
Sbjct:   48 RTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKA 182          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 66/135 (48.89%), Postives = 91/135 (67.41%), Query Frame = -3
Query:  212 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 616
            + V+ DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T   SFN+VK+WL E+  +    V ++LVGNK DL   R +  E  K+ A+E G+ FMETSA D+TNVE AF  +   I   ++ +   ++A
Sbjct:   48 RTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNA 182          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 61/130 (46.92%), Postives = 92/130 (70.77%), Query Frame = -3
Query:  227 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   SF++++ W+  +  H    V +M++GNK D++  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +K+
Sbjct:   48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKL 177          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 72/165 (43.64%), Postives = 106/165 (64.24%), Query Frame = -3
Query:  122 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCC 616
            + +++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL+E+  +    V ++LVGNK DL + + V     K  A++ G+ F+ETSA ++TNVE AF  +  EI + +      SD+ K  + +N  T V    +++KG      CC
Sbjct:   51 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDS-KPSVKINSSTPV----SANKG-----GCC 205          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 60/122 (49.18%), Postives = 89/122 (72.95%), Query Frame = -3
Query:  251 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 616
            + +++DGK +K QIWDTAGQERFR +T+AYYRGA+G L++YD+T + SF++V+ W   +  H    V ++L+GNKCD +  R VS E+G++LA+E G+ F+E SA  + NV+ AF  + REI
Sbjct:   49 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 64/122 (52.46%), Postives = 89/122 (72.95%), Query Frame = -3
Query:  251 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 616
            + +++DGK +K QIWDTAGQERFR +TS+YYRGA G +VVYD+T + SFN+VK+WL E+  +    V ++LVGNK DL + R VST+  K  AE  G+ F+ETSA ++ NVE AF ++  +I
Sbjct:   48 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_CANFA5.228e-3243.05Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
ARA3_ARATH5.228e-3242.17Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU6.828e-3242.51Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
YPTM1_MAIZE8.917e-3255.65GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
YPTC1_CHLRE1.521e-3148.89GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RBD2A_ARATH1.521e-3148.89Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB8A_PONAB1.521e-3146.92Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB1A_LYMST1.521e-3143.64Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPT2_SCHPO1.987e-3149.18GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
YPT1_PHYIN1.987e-3152.46Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
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