CX069735 | Citrus Genome Database

Overview


Name	CX069735
Unique Name	CX069735
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	785

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2005	contig	Csv1_Contig2005:33..817.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  FK++H L             YPDR+PVIVEK   S I +IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  FK++H L             YPDR+PVIVEK   S I +IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  FK++H L             YPDR+PVIVEK   S I +IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  +K+EH               YPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  +K+EH               YPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  +K+EH               YPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  +K+EH               YPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  +K+EH               YPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.865e-29
Identity = 58/115 (50.43%), Postives = 80/115 (69.57%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  +K++H               YPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+ ++ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116

[Close]

BLAST of CX069735 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.084e-28
Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1

Query:   64 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 408
            K  +K++H               YPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116

The following BLAST results are available for this feature:

BLAST of CX069735 vs. ExPASy Swiss-Prot

BLAST of CX069735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83


Match Name	E-value	Identity	Description
GBRL2_MOUSE	6.139e-32	56.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL2_HUMAN	6.139e-32	56.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL2_BOVIN	6.139e-32	56.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRAP_RAT	2.852e-29	53.04	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRAP_RABIT	2.852e-29	53.04	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRAP_MOUSE	2.852e-29	53.04	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRAP_HUMAN	2.852e-29	53.04	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRAP_BOVIN	2.852e-29	53.04	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL1_PONAB	4.865e-29	50.43	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL1_XENTR	1.084e-28	50.43	Gamma-aminobutyric acid receptor-associated protei...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_12E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E03-J6-1-4.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX069735 ID=CX069735; Name=CX069735; organism=Citrus sinensis; type=EST; length=785bp
GCTCTTTTCTGTTTTTTTTTCCTCTCGCTTCTTCGCTTCGACTCTTCACA
AGGAGGAATGGCAAAGAGTTACTTCAAGCAAGAGCATGATCTTGAGAAGA
GACGCGCAGAGGCTGCAAGGATTAGGGAGAAGTACCCTGACAGGATTCCG
GTGATTGTGGAGAAGGCAGAGAGAAGTGACATACCAAATATAGATAAGAA
GAAGTATCTTGTTCCAGCTGACCTGACTGTAGGACAATTTGTCTATGTCA
TCCGTAAAAGGATCAAACTGAGTGCTGAAAAGGCGATATTTATTTTTGTG
GATAATGTGCTCCCACCTACAGGTGCAATTATGTCTGCCATATACGAAGA
GAAAAAGGATGAAGATGGTTTTCTTTATGTGACTTACAGTGGGGAGAACA
CATTTGGAAGCCACATCCCAGTTTAGCCTTGTGATTATCTATCTGCTCAT
TGTGTGGTTTCTTGTGCGACCGCATTTTTATCTCAATTGTCATCCTTGCT
TTCCGCTGAATATTCCTTTATCGGGCATATTTTATATTTTATAAAGACAT
TGCCAGTGATAATATGTACAGTTACCTATTGTATATAAGTCTTAAAGGCA
TAATATGTCAAGTTTCTTTCTTGCCTTTCTATTTTGATGATTTTTTTTCG
GTTTGGGTATTTGCTGCTGGTTTCAATCTGTAATCTTTATCACGAAATAC
TTGACTTGGAACCCGGATTCGGCGTGTTTGTGAGCCATTGCTATTTTTAA
GATGTAAATTTGACCAACTTATTAAAAGTAAAAAA