CX069734

Overview
NameCX069734
Unique NameCX069734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2005 contig Csv1_Contig2005:29..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  FK++H L            KYPDR+PVIVEK   S I +IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  FK++H L            KYPDR+PVIVEK   S I +IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  FK++H L            KYPDR+PVIVEK   S I +IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.910e-29
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  +K+EH              KYPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.910e-29
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  +K+EH              KYPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.910e-29
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  +K+EH              KYPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.910e-29
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  +K+EH              KYPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.910e-29
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  +K+EH              KYPDR+PVIVEKA ++ I ++DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.965e-29
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  +K++H              KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+ ++ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.106e-28
Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = -2
Query:  382 KSYFKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 726
            K  +K++H              KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of CX069734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL2_MOUSE6.266e-3257.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN6.266e-3257.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN6.266e-3257.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT2.910e-2953.91Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT2.910e-2953.91Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE2.910e-2953.91Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN2.910e-2953.91Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN2.910e-2953.91Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB4.965e-2951.30Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR1.106e-2851.30Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069734 ID=CX069734; Name=CX069734; organism=Citrus sinensis; type=EST; length=793bp
CTTTTTTTTTACTTCTAATAAGTTGGTCAAATTTACATCTTAAAAATAGC
AATGGCTCACAAACACGCCGAATCCGGGTTCCAAGTCAAGTATTTCGTGA
TAAAGATTACAGATTGAAACCAGCAGCAAATACCCAAACCGAAAAAAAAT
CATCAAAATAGAAAGGCAAGAAAGAAACTTGACATATTATGCCTTTAAGA
CTTATATACAATAGGTAACTGTACATATTATCACTGGCAATGTCTTTATA
AAATATAAAATATGCCCGATAAAGGAATATTCAGCGGAAAGCAAGGATGA
CAATTGAGATAAAAATGCGGTCGCACAAGAAACCACACAATGAGCAGATA
GATAATCACAAGGCTAAACTGGGATGTGGCTTCCAAATGTGTTCTCCCCA
CTGTAAGTCACATAAAGAAAACCATCTTCATCCTTTTTCTCTTCGTATAT
GGCAGACATAATTGCACCTGTAGGTGGGAGCACATTATCCACAAAAATAA
ATATCGCCTTTTCAGCACTCAGTTTGATCCTTTTACGGATGACATAGACA
AATTGTCCTACAGTCAGGTCAGCTGGAACAAGATACTTCTTCTTATCTAT
ATTTGGTATGTCACTTCTCTCTGCCTTCTCCACAATCACCGGAATCCTGT
CAGGGTACTTCTCCCTAATCCTTGCAGCCTCTGCGCGTCTCTTCTCAAGA
TCATGCTCTTGCTTGAAGTAACTCTTTGCCATTCCTCCTTGTGAAGAGTC
GAAGCGAAGAAGCGAGAGGAAAAAAAAACAGAAAAGAGCCCTC
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