CX069734

Overview
NameCX069734
Unique NameCX069734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2005 contig Csv1_Contig2005:29..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.550e-25
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  373 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLS---AEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 717
            FKQE+ L            +Y DR+P+IVE+A  SD+P+I+KKK+L P+++ +  F+  IRK +  S    +KAIF+FV+ N LPP+  ++S+IY+  KDEDGFLY+ YSGENTFGS I
Sbjct:    8 FKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGSDI 126          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.330e-25
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = -2
Query:  382 YPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 657
            YPDRIPVI+EK   +D+P+++K KYLVP D+TVG F++++ KR++L   KA+F+FV N LP T + M ++Y   K+EDGFLY+ YS E TFG
Sbjct:   28 YPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.957e-17
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  382 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAERSD-IPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 717
            FKQ   L            K+P++IPV+VE+  R   +P +DK K+LVP +LT+ QF+ +IR R+ L A +A ++ V+N  L    A M+ IY + KDEDGF+Y+TY+ + TFG
Sbjct:   13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 42/127 (33.07%), Postives = 75/127 (59.06%), Query Frame = -2
Query:  343 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV*PCDYLSA 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE ++DEDGFLY+ Y+ + TFG+ + V    Y+SA
Sbjct:    7 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTALAV---TYMSA 130          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 40/119 (33.61%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  367 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE +KDEDGFLY+ Y+ + TFG  + V
Sbjct:    7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKLSV 125          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = -2
Query:  367 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE ++DEDGFLY+ Y+ + TFG+ + V
Sbjct:    7 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTAMAV 125          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 39/119 (32.77%), Postives = 69/119 (57.98%), Query Frame = -2
Query:  367 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +  +YE +KDEDGFLY+ Y+ + TFG  + V
Sbjct:    7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGMKLSV 125          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 39/114 (34.21%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  382 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE++KDEDGFLY+ Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 39/114 (34.21%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  382 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE++KDEDGFLY+ Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 39/114 (34.21%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  382 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE++KDEDGFLY+ Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
The following BLAST results are available for this feature:
BLAST of CX069734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8L_DICDI2.550e-2548.74Autophagy-related protein 8-like protein DDB_G0290... [more]
ATG8H_ARATH3.330e-2554.35Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
MLP3C_HUMAN1.957e-1742.11Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT5.329e-1533.07Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN6.960e-1533.61Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE1.187e-1432.77Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN2.645e-1432.77Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT4.511e-1434.21Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_MOUSE4.511e-1434.21Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN4.511e-1434.21Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069734 ID=CX069734; Name=CX069734; organism=Citrus sinensis; type=EST; length=793bp
CTTTTTTTTTACTTCTAATAAGTTGGTCAAATTTACATCTTAAAAATAGC
AATGGCTCACAAACACGCCGAATCCGGGTTCCAAGTCAAGTATTTCGTGA
TAAAGATTACAGATTGAAACCAGCAGCAAATACCCAAACCGAAAAAAAAT
CATCAAAATAGAAAGGCAAGAAAGAAACTTGACATATTATGCCTTTAAGA
CTTATATACAATAGGTAACTGTACATATTATCACTGGCAATGTCTTTATA
AAATATAAAATATGCCCGATAAAGGAATATTCAGCGGAAAGCAAGGATGA
CAATTGAGATAAAAATGCGGTCGCACAAGAAACCACACAATGAGCAGATA
GATAATCACAAGGCTAAACTGGGATGTGGCTTCCAAATGTGTTCTCCCCA
CTGTAAGTCACATAAAGAAAACCATCTTCATCCTTTTTCTCTTCGTATAT
GGCAGACATAATTGCACCTGTAGGTGGGAGCACATTATCCACAAAAATAA
ATATCGCCTTTTCAGCACTCAGTTTGATCCTTTTACGGATGACATAGACA
AATTGTCCTACAGTCAGGTCAGCTGGAACAAGATACTTCTTCTTATCTAT
ATTTGGTATGTCACTTCTCTCTGCCTTCTCCACAATCACCGGAATCCTGT
CAGGGTACTTCTCCCTAATCCTTGCAGCCTCTGCGCGTCTCTTCTCAAGA
TCATGCTCTTGCTTGAAGTAACTCTTTGCCATTCCTCCTTGTGAAGAGTC
GAAGCGAAGAAGCGAGAGGAAAAAAAAACAGAAAAGAGCCCTC
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