CX069734

Overview
NameCX069734
Unique NameCX069734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2005 contig Csv1_Contig2005:29..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 39/114 (34.21%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  382 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE++KDEDGFLY+ Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14
Identity = 39/119 (32.77%), Postives = 69/119 (57.98%), Query Frame = -2
Query:  367 FKQEHDLXXXXXXXXXXXXKYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV 717
            FKQ                ++P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE +KDEDGFLY+  + + TFG  + V
Sbjct:    7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFGMKLSV 125          
BLAST of CX069734 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = -2
Query:  382 PDRIPVIVEK--AERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV-DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 654
            P+++PVI+E+   ERS +P +D+ K+LVP  +TV + + ++R+R++L  ++A F+ V +  +      MS +Y +++D DGF+Y+ Y+ +  FG
Sbjct:   38 PNKVPVIIERFDGERS-LPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of CX069734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3A_BOVIN4.511e-1434.21Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN7.695e-1432.77Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL1.228e-1135.11Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069734 ID=CX069734; Name=CX069734; organism=Citrus sinensis; type=EST; length=793bp
CTTTTTTTTTACTTCTAATAAGTTGGTCAAATTTACATCTTAAAAATAGC
AATGGCTCACAAACACGCCGAATCCGGGTTCCAAGTCAAGTATTTCGTGA
TAAAGATTACAGATTGAAACCAGCAGCAAATACCCAAACCGAAAAAAAAT
CATCAAAATAGAAAGGCAAGAAAGAAACTTGACATATTATGCCTTTAAGA
CTTATATACAATAGGTAACTGTACATATTATCACTGGCAATGTCTTTATA
AAATATAAAATATGCCCGATAAAGGAATATTCAGCGGAAAGCAAGGATGA
CAATTGAGATAAAAATGCGGTCGCACAAGAAACCACACAATGAGCAGATA
GATAATCACAAGGCTAAACTGGGATGTGGCTTCCAAATGTGTTCTCCCCA
CTGTAAGTCACATAAAGAAAACCATCTTCATCCTTTTTCTCTTCGTATAT
GGCAGACATAATTGCACCTGTAGGTGGGAGCACATTATCCACAAAAATAA
ATATCGCCTTTTCAGCACTCAGTTTGATCCTTTTACGGATGACATAGACA
AATTGTCCTACAGTCAGGTCAGCTGGAACAAGATACTTCTTCTTATCTAT
ATTTGGTATGTCACTTCTCTCTGCCTTCTCCACAATCACCGGAATCCTGT
CAGGGTACTTCTCCCTAATCCTTGCAGCCTCTGCGCGTCTCTTCTCAAGA
TCATGCTCTTGCTTGAAGTAACTCTTTGCCATTCCTCCTTGTGAAGAGTC
GAAGCGAAGAAGCGAGAGGAAAAAAAAACAGAAAAGAGCCCTC
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