CX069727

Overview
NameCX069727
Unique NameCX069727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069727_ssr789 microsatellite CX069727_ssr789:789..798. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MK13_RAT (Mitogen-activated protein kinase 13 OS=Rattus norvegicus GN=Mapk13 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 2 
Query:  134 YVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENV 364
            + + +I    +++   Y+ P   +G GAYG VCSA++  T E+VAIKK++  F + I AKR  RE+ LL HM+HENV
Sbjct:    9 FYKQDINKTAWELPKTYLAPAH-VGSGAYGAVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMHHENV 84
[Close]
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MK13_MOUSE (Mitogen-activated protein kinase 13 OS=Mus musculus GN=Mapk13 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 2 
Query:  134 YVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENV 364
            + + +I    +++   Y+ P   +G GAYG VCSA++  T E+VAIKK++  F + I AKR  RE+ LL HM+HENV
Sbjct:    9 FYKQDINKTAWELPKTYLAPAH-VGSGAYGAVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMHHENV 84
The following BLAST results are available for this feature:
BLAST of CX069727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
MK13_RAT8.658e-1144.16Mitogen-activated protein kinase 13 OS=Rattus norv... [more]
MK13_MOUSE8.658e-1144.16Mitogen-activated protein kinase 13 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D10-H20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069727 ID=CX069727; Name=CX069727; organism=Citrus sinensis; type=EST; length=832bp
GGCTTTACTTAAAAACGCGAGAACTCTTATCTTCTTTCTCATTCTTCTTC
GGCTTAAAAGTTGGTTTTTAAAAAAAATGGAGAACGAATCGATGGTGATG
AAAGACAGAGGGATTCCACTGTACGGTGGCAAATACGTACAGTACAATAT
TCTAGGAAACCTCTTTCAGGTCTCCTCTAAGTACGTTCCTCCTCTTCAGC
CTATTGGTCGCGGCGCATACGGCATCGTTTGTAGTGCTGTAAATTCAGAG
ACAAAAGAAGAGGTTGCAATAAAGAAAATTACGAATGCATTCGATAACAG
GATTGATGCCAAGAGGATCCTCCGTGAGATCAAACTCCTCTGTCACATGA
ATCATGAGAATGTATTTACTTCTGTAAACTTATAGGCTTGTTTACTGTCC
TGTGTTTTTCTAGCATTATTACTCTACTTTCACTTGCAAATCCCTGCTTC
TGATAAAAAGATGTTTTCCTAGAATTGCCTATATATATGTGTCTGGATTA
ATGATCTAGTGGGCGATGTTGCTCATGTTATGGTGAGCCATGCTGCTATG
TGGTGTGCTCTAGTTATCTATAGCTTCAACTCTATCTTTAAGGTGTTATA
GAATCATGTCATGTTTGCAGTTGCTCAATAGATCATTTTTCTGTGTATAC
ATATCCACACACAACAAATGATCTGGTAAGTGCAGTTCTATAATGCCTTG
TTAATGGTGTTGAAGTTGTTTAATCTGACAGGCCAACATGACAGTGTTGC
TCACTATAACGTGAGCAACGTCACCTATTAGATCATTACTCTCTCTCTAT
ATATAAGAATTCTAAAGTGTAGACATCTATTA
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