CX069723

Overview
NameCX069723
Unique NameCX069723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.285e-25
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  114 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY 509
            +KR+  EL  L      S SA PV + D+ +W   I GP D+PY+G  F V++ FP +YPF PP + F + ++HPN++ +G+ICLDILKE+WS    +  +LLS+ SLL +PN   PL    A ++  D  +Y
Sbjct:   10 TKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  117 KRILKELKDLQK-DPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRNKYETTARSWTQKYAMG 551
            KR+ KE    Q  D        PV + DMFHW+A I GP ++PY GG +++ IH    YP  PP V F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + +T D+  Y +  R  T  YA G
Sbjct:    6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  117 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG*T 557
            +R+ KE+  L  DPP      P  ED+   Q  I GP  +PYA G+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + A+  T+ +A G T
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQGST 160          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.559e-25
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   66 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY-------KTDRNKYET 515
            K +      S+     SKR+ +EL+ L        +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+       K    KY+T
Sbjct:   16 KERPRDMTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKYKT 172          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.559e-25
Identity = 57/147 (38.78%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  120 RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRNKYETTARSWTQKYAM 548
            R+ KE K++Q++         + +D  +F W A I GP ++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   + + A+ +T+  AM
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAM 153          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.248e-24
Identity = 55/159 (34.59%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   42 LPHESTYCKAKSGGSAASQVETMA-SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 512
            + +++ +  +K+  SA   V+  + +KR+  EL  L        SA P ++ ++ HW  TI GP D+ Y G  F +++ FP +YP+ PP + F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:    5 MQNQNPHTNSKNSSSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.630e-24
Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  123 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQ 536
            + KE+  L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+ +NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.630e-24
Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  123 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQ 536
            + KE+  L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+ +NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.630e-24
Identity = 57/143 (39.86%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  114 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 542
            SKR+ KEL +L        SA P  E++F W  TI GP ++ Y+G  + +++ FP  YP+  P V F T  FHPN++  G+ICLDILK++WS    +  +LLSI SLL +PN + PL  + A M+  D+ +Y+    ++ +K+
Sbjct:   34 SKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW-NDQKEYKKYLDAFYEKH 175          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.781e-24
Identity = 56/138 (40.58%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  123 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQ 536
            + KE+  L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+  NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
The following BLAST results are available for this feature:
BLAST of CX069723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC11_YEAST3.285e-2542.11Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC16_SCHPO7.319e-2541.61Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UB2SC_XENLA7.319e-2538.78Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBE2C_SPISO9.559e-2537.58Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC21_ARATH9.559e-2538.78Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC11_SCHPO1.248e-2434.59Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2S_HUMAN1.630e-2440.58Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_BOVIN1.630e-2440.58Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBE2C_DROME1.630e-2439.86Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBE2S_RAT2.781e-2440.58Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12D07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D07-H14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069723 ID=CX069723; Name=CX069723; organism=Citrus sinensis; type=EST; length=788bp
AGTATCTCAGTTTTTGTTTCTAATTTTCCCGATCTCCCTGTCTCCCTCAC
GAATCCACATATTGCAAGGCCAAATCAGGAGGATCTGCTGCTTCTCAGGT
TGAAACTATGGCGTCGAAACGGATCTTGAAGGAGCTCAAAGATTTGCAGA
AGGATCCTCCTACATCATGCAGTGCCGGTCCTGTTGCTGAAGACATGTTT
CATTGGCAGGCGACAATCATGGGTCCTCCAGATAGTCCGTATGCTGGGGG
TGTTTTTCTAGTTACCATCCATTTTCCCCCAGACTATCCATTCAAGCCTC
CCAAGGTAGCATTCAGGACAAAGGTATTTCATCCTAACATAAATAGCAAT
GGGAGCATTTGCCTTGACATCTTGAAGGAACAATGGAGTCCTGCTCTTAC
CATTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACGGATCCAAATC
CCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAAGACCGACAGG
AACAAGTACGAGACAACTGCAAGGAGCTGGACCCAGAAGTATGCCATGGG
CTAAACCTGGGTTATGGTGTGTGAGGGGGTTCCTTTTCTTTTTAATTCTG
GTTTCGAGTTAATGTATGAATATTCTGTCTGTTCAATCCTAAAAAGTGGA
CCATAAGAAAGGTCCACTACATCCCCCGAATTGGAAAGGAGAAACGGGTT
GCTTCTTAATTGTTGTATGGATAATGTCACTTTGGTCAATCAAATGTGTT
CTGATAATGTCACTTGGTCAGCCAAAAAAAAAAAAAAA
back to top