CX069723

Overview
NameCX069723
Unique NameCX069723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.781e-24
Identity = 56/138 (40.58%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  123 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQ 536
            + KE+  L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+  NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.781e-24
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   84 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 545
            S  S VE ++    ++++KEL+D++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.781e-24
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  111 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY 509
            AS  + K+LKDL K P    SAG V E ++F W  +IMGPPD+ Y GG F   + FP +YP  PP V F ++++HPN+ S+G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++ +R ++
Sbjct:    6 ASLLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEF 152          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.781e-24
Identity = 56/138 (40.58%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  123 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQ 536
            + KE+  L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+  NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.632e-24
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   84 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 545
            S  S VE ++    ++++KEL+D++  PP          D+   QA I GP  +PYA GVF V +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.632e-24
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  108 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIA-----HMYKTDRNKYETTARSWTQK 539
            M S  +L E K+L  +P          +++  W   + GPPD+ Y GG+F   I FPP YP++PP++ F ++++HPNI S+G +C+ IL     +EQ   WSPA  I  VLLS+ SLL +PNPD P   + A     ++YK D   Y    +   +K
Sbjct:    1 MVSSFLLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKK 157          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.744e-24
Identity = 54/153 (35.29%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  111 ASKRIL-KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 524
            AS+++L K+LK++QK+PP   S G V +  +F W+  I+GP D+ Y GG F  T+ FP DYP  PPK+ F T+++HPN++ NG +C+ IL              E+W P  +   +L+S+ S+L+ PN + P   + A  ++ +  +++   R
Sbjct:    5 ASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVR 157          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.196e-24
Identity = 57/157 (36.31%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   75 SGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 545
            SG S    +     +++ KE+ DL   PP      P  +D+   QATI GP  +PY GG F + +    D+P  PPK  F TK+FHPN+  NG IC++ LK+ W   L +  +LL+I  LL  PNP+  L  E   +     + Y   AR  T+ +A
Sbjct:    2 SGSSNVENLSPQIIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHA 158          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.196e-24
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  105 TMASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 512
            + AS  + K+LKDL K P    SAG V E ++F W  TI+GPPD+ Y GG F   + FP +YP  PP V F + ++HPN+ S+G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  R++++
Sbjct:    3 SQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFK 152          
BLAST of CX069723 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.092e-24
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   84 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 545
            S  S VE ++    ++++KEL+D++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
The following BLAST results are available for this feature:
BLAST of CX069723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2S_MOUSE2.781e-2440.58Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UBE2S_DROGR2.781e-2438.85Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBC14_ARATH2.781e-2438.78Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UB2SA_XENLA2.781e-2440.58Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2S_DROVI3.632e-2439.49Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBC_ASFM23.632e-2437.58Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC15_SCHPO4.744e-2435.29Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBE2S_BRAFL6.196e-2436.31Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBC7_ARATH6.196e-2438.00Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBE2S_DROMO8.092e-2438.22Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D07-H14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069723 ID=CX069723; Name=CX069723; organism=Citrus sinensis; type=EST; length=788bp
AGTATCTCAGTTTTTGTTTCTAATTTTCCCGATCTCCCTGTCTCCCTCAC
GAATCCACATATTGCAAGGCCAAATCAGGAGGATCTGCTGCTTCTCAGGT
TGAAACTATGGCGTCGAAACGGATCTTGAAGGAGCTCAAAGATTTGCAGA
AGGATCCTCCTACATCATGCAGTGCCGGTCCTGTTGCTGAAGACATGTTT
CATTGGCAGGCGACAATCATGGGTCCTCCAGATAGTCCGTATGCTGGGGG
TGTTTTTCTAGTTACCATCCATTTTCCCCCAGACTATCCATTCAAGCCTC
CCAAGGTAGCATTCAGGACAAAGGTATTTCATCCTAACATAAATAGCAAT
GGGAGCATTTGCCTTGACATCTTGAAGGAACAATGGAGTCCTGCTCTTAC
CATTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACGGATCCAAATC
CCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAAGACCGACAGG
AACAAGTACGAGACAACTGCAAGGAGCTGGACCCAGAAGTATGCCATGGG
CTAAACCTGGGTTATGGTGTGTGAGGGGGTTCCTTTTCTTTTTAATTCTG
GTTTCGAGTTAATGTATGAATATTCTGTCTGTTCAATCCTAAAAAGTGGA
CCATAAGAAAGGTCCACTACATCCCCCGAATTGGAAAGGAGAAACGGGTT
GCTTCTTAATTGTTGTATGGATAATGTCACTTTGGTCAATCAAATGTGTT
CTGATAATGTCACTTGGTCAGCCAAAAAAAAAAAAAAA
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