DR404003

Overview
NameDR404003
Unique NameDR404003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:171..592. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_DRIGR (Photosystem II reaction center protein K OS=Drimys granadensis GN=psbK PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.630e-24
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL+ ICLNSAL+SSSF FAKLPEAYAF NPIVD MPVIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALHSSSFFFAKLPEAYAFFNPIVDFMPVIPVLFFLLALVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_DAUCA (Photosystem II reaction center protein K OS=Daucus carota GN=psbK PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.630e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL+ ICLNSA YSSS  FAKLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSAFYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SOLTU (Photosystem II reaction center protein K OS=Solanum tuberosum GN=psbK PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.302e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SOLLC (Photosystem II reaction center protein K OS=Solanum lycopersicum GN=psbK PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.302e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SOLBU (Photosystem II reaction center protein K OS=Solanum bulbocastanum GN=psbK PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.302e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ATRBE (Photosystem II reaction center protein K OS=Atropa belladonna GN=psbK PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.302e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_EUCGG (Photosystem II reaction center protein K OS=Eucalyptus globulus subsp. globulus GN=psbK PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.700e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL+ ICL+S LYSSSF  AKLPEAYAFLNPIVD MPVIP+LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLHSTLYSSSFFLAKLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_TOBAC (Photosystem II reaction center protein K OS=Nicotiana tabacum GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.787e-23
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SOYBN (Photosystem II reaction center protein K OS=Glycine max GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.787e-23
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIF+L+ IC++S LYSSSF  AKLPEAYAFLNPIVD+MPVIP+LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLVCICIHSVLYSSSFFSAKLPEAYAFLNPIVDIMPVIPLLFFLLAFVWQAAVSFR 61
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_POPAL (Photosystem II reaction center protein K OS=Populus alba GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.787e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 2 
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNI +L+ ICLN ALYSSSF F KLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNILNLICICLNFALYSSSFFFTKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61
The following BLAST results are available for this feature:
BLAST of DR404003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PSBK_DRIGR7.630e-2488.52Photosystem II reaction center protein K OS=Drimys... [more]
PSBK_DAUCA7.630e-2486.89Photosystem II reaction center protein K OS=Daucus... [more]
PSBK_SOLTU1.302e-2385.25Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_SOLLC1.302e-2385.25Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_SOLBU1.302e-2385.25Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_ATRBE1.302e-2385.25Photosystem II reaction center protein K OS=Atropa... [more]
PSBK_EUCGG1.700e-2386.89Photosystem II reaction center protein K OS=Eucaly... [more]
PSBK_TOBAC3.787e-2383.61Photosystem II reaction center protein K OS=Nicoti... [more]
PSBK_SOYBN3.787e-2383.61Photosystem II reaction center protein K OS=Glycin... [more]
PSBK_POPAL3.787e-2385.25Photosystem II reaction center protein K OS=Populu... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404003 ID=DR404003; Name=DR404003; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTT
GTTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCT
TTTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAA
TAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTT
TAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTC
GCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTAT
GCCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTG
CTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGAT
TTATTCTAGTTCGAAAAAAAAA
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