DR404003 | Citrus Genome Database

Overview


Name	DR404003
Unique Name	DR404003
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	422

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:171..592.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PIPCE (Photosystem II reaction center protein K OS=Piper cenocladum GN=psbK PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.328e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL  ICL+SAL+SSSF FAKLPEAYA  NPIVDVMPVIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSL--ICLSSALHSSSFFFAKLPEAYALFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_OENEH (Photosystem II reaction center protein K OS=Oenothera elata subsp. hookeri GN=psbK PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL  ICLNS LYSS F  AKLPEAYAFLNPIVDVMPVIP+ F LLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSDLYSSRFFLAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 59

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_AMBTC (Photosystem II reaction center protein K OS=Amborella trichopoda GN=psbK PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.544e-21
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NIFSL+ ICL+SAL+SS F FAKLPEAYA  NPIVDVMPVIP+ FFLLAFVWQAA SFR
Sbjct:    1 MPNIFSLICICLHSALHSSGFFFAKLPEAYAVFNPIVDVMPVIPLFFFLLAFVWQAAASFR 61

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SILLA (Photosystem II reaction center protein K OS=Silene latifolia GN=psbK PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.046e-21
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL  I LNSALYSSS  FAKLPEAYAFL+PIVD MPVIP+LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--IGLNSALYSSSCFFAKLPEAYAFLSPIVDFMPVIPLLFFLLAFVWQAAVSFR 59

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ARATH (Photosystem II reaction center protein K OS=Arabidopsis thaliana GN=psbK PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.046e-21
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIF+L+ I  NS L+SS+FL AKLPEAYAFLNPIVDVMPVIP+ F LLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICIFFNSTLFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSJ (Photosystem II reaction center protein K OS=Oryza sativa subsp. japonica GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSI (Photosystem II reaction center protein K OS=Oryza sativa subsp. indica GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSA (Photosystem II reaction center protein K OS=Oryza sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ORYNI (Photosystem II reaction center protein K OS=Oryza nivara GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SECCE (Photosystem II reaction center protein K OS=Secale cereale GN=psbK PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.759e-20
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 2

Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS LY +SF FAKLPEAYA  NPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTSFFFAKLPEAYAIFNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

The following BLAST results are available for this feature:

BLAST of DR404003 vs. ExPASy Swiss-Prot

BLAST of DR404003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82


Match Name	E-value	Identity	Description
PSBK_PIPCE	9.328e-22	86.89	Photosystem II reaction center protein K OS=Piper ...	[more]
PSBK_OENEH	2.714e-21	85.25	Photosystem II reaction center protein K OS=Oenoth...	[more]
PSBK_AMBTC	3.544e-21	80.33	Photosystem II reaction center protein K OS=Ambore...	[more]
PSBK_SILLA	6.046e-21	86.89	Photosystem II reaction center protein K OS=Silene...	[more]
PSBK_ARATH	6.046e-21	80.33	Photosystem II reaction center protein K OS=Arabid...	[more]
PSBK_ORYSJ	1.347e-20	78.69	Photosystem II reaction center protein K OS=Oryza ...	[more]
PSBK_ORYSI	1.347e-20	78.69	Photosystem II reaction center protein K OS=Oryza ...	[more]
PSBK_ORYSA	1.347e-20	78.69	Photosystem II reaction center protein K OS=Oryza ...	[more]
PSBK_ORYNI	1.347e-20	78.69	Photosystem II reaction center protein K OS=Oryza ...	[more]
PSBK_SECCE	1.759e-20	77.05	Photosystem II reaction center protein K OS=Secale...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAH-PNP1246P14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P14 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR404003 ID=DR404003; Name=DR404003; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTT
GTTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCT
TTTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAA
TAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTT
TAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTC
GCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTAT
GCCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTG
CTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGAT
TTATTCTAGTTCGAAAAAAAAA