DR404003

Overview
NameDR404003
Unique NameDR404003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:171..592. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_HORVU (Photosystem II reaction center protein K OS=Hordeum vulgare GN=psbK PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.759e-20
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS LY +SF FAKLPEAYA  NPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTSFFFAKLPEAYAIFNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SORBI (Photosystem II reaction center protein K OS=Sorghum bicolor GN=psbK PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 49/61 (80.33%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS L  +SF FAKLPEAYA  NPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLCPTSFFFAKLPEAYAIFNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SACOF (Photosystem II reaction center protein K OS=Saccharum officinarum GN=psbK PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 49/61 (80.33%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS L  +SF FAKLPEAYA  NPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLCPTSFFFAKLPEAYAIFNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SACHY (Photosystem II reaction center protein K OS=Saccharum hybrid GN=psbK PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 49/61 (80.33%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS L  +SF FAKLPEAYA  NPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLCPTSFFFAKLPEAYAIFNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_MAIZE (Photosystem II reaction center protein K OS=Zea mays GN=psbK PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 49/61 (80.33%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS L  +SF FAKLPEAYA  NPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLCPTSFFFAKLPEAYAIFNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_WHEAT (Photosystem II reaction center protein K OS=Triticum aestivum GN=psbK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.730e-20
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_AGRST (Photosystem II reaction center protein K OS=Agrostis stolonifera GN=psbK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.945e-19
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALY-SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NI SL  IC NS LY ++SF FAKLPEAYA  NPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTTSFFFAKLPEAYAIFNPIVDVMPVIPLFFFLLAFVWQAAVSFR 62          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_LOTJA (Photosystem II reaction center protein K OS=Lotus japonicus GN=psbK PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M+NI SL+ I +NS  YSS F   KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MINIVSLVCIYINSVPYSSIFFLDKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PEA (Photosystem II reaction center protein K (Fragment) OS=Pisum sativum GN=psbK PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVL 319
            MLNIFSL+ IC+NSALYSSSF   KLPEAYAFLNPIVD MPVIP+L
Sbjct:    1 MLNIFSLVCICINSALYSSSFFLGKLPEAYAFLNPIVDFMPVIPLL 46          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PHYPA (Photosystem II reaction center protein K OS=Physcomitrella patens GN=psbK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            ML IF+   I L++A + +  + AKLPEAYA  +PIVDVMP+IPV FFLLAFVWQA+VSFR
Sbjct:    1 MLAIFN---IYLDNAFHLNGIILAKLPEAYAIFDPIVDVMPIIPVFFFLLAFVWQASVSFR 58          
The following BLAST results are available for this feature:
BLAST of DR404003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PSBK_HORVU1.759e-2077.05Photosystem II reaction center protein K OS=Hordeu... [more]
PSBK_SORBI2.297e-2080.33Photosystem II reaction center protein K OS=Sorghu... [more]
PSBK_SACOF2.297e-2080.33Photosystem II reaction center protein K OS=Saccha... [more]
PSBK_SACHY2.297e-2080.33Photosystem II reaction center protein K OS=Saccha... [more]
PSBK_MAIZE2.297e-2080.33Photosystem II reaction center protein K OS=Zea ma... [more]
PSBK_WHEAT8.730e-2075.41Photosystem II reaction center protein K OS=Tritic... [more]
PSBK_AGRST1.945e-1977.42Photosystem II reaction center protein K OS=Agrost... [more]
PSBK_LOTJA2.540e-1975.41Photosystem II reaction center protein K OS=Lotus ... [more]
PSBK_PEA6.475e-1582.61Photosystem II reaction center protein K (Fragment... [more]
PSBK_PHYPA2.460e-1463.93Photosystem II reaction center protein K OS=Physco... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404003 ID=DR404003; Name=DR404003; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTT
GTTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCT
TTTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAA
TAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTT
TAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTC
GCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTAT
GCCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTG
CTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGAT
TTATTCTAGTTCGAAAAAAAAA
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