DR404003

Overview
NameDR404003
Unique NameDR404003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:171..592. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_CYAP4 (Photosystem II reaction center protein K OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psbK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.325e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:  245 LFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            LFAKLPEAY+  +P+VDV+PVIPVLF  LAFVWQA+V FR
Sbjct:    6 LFAKLPEAYSIFDPLVDVLPVIPVLFLALAFVWQASVGFR 45          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_THEEB (Photosystem II reaction center protein K OS=Thermosynechococcus elongatus (strain BP-1) GN=psbK PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 2
Query:  245 LFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            L AKLPEAYA  +P+VDV+PVIPVLF  LAFVWQAAV FR
Sbjct:    7 LVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR 46          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_EUGGR (Photosystem II reaction center protein K OS=Euglena gracilis GN=psbK PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  200 LMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            + +I LN+   +++F F  LPE YA  +P++DV+P+IPVLFFLLAFVWQA+V FR
Sbjct:    1 MSFITLNNFFNTNTF-FGLLPEQYAPFDPLIDVLPIIPVLFFLLAFVWQASVKFR 54          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SYNP6 (Photosystem II reaction center protein K OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psbK PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 2
Query:  236 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            ++ L AKLPEAY   +P+VDV+PVIPV F LLAFVWQAAV FR
Sbjct:    3 AALLLAKLPEAYQIFDPLVDVLPVIPVFFLLLAFVWQAAVGFR 45          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SYNE7 (Photosystem II reaction center protein K OS=Synechococcus elongatus (strain PCC 7942) GN=psbK PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 2
Query:  236 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            ++ L AKLPEAY   +P+VDV+PVIPV F LLAFVWQAAV FR
Sbjct:    3 AALLLAKLPEAYQIFDPLVDVLPVIPVFFLLLAFVWQAAVGFR 45          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_NOSP7 (Photosystem II reaction center protein K OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psbK PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 2
Query:  236 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            ++ L AKLPEAY   +P+VDV+PVIPV F LLAFVWQAAV FR
Sbjct:    3 AALLLAKLPEAYQIFDPLVDVLPVIPVFFLLLAFVWQAAVGFR 45          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_CHLVU (Photosystem II reaction center protein K OS=Chlorella vulgaris GN=psbK PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:  245 LFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            L AKLPEAYA  +PIVDV+PVIPVLF LLA VWQA+VSFR
Sbjct:    3 LLAKLPEAYAPFDPIVDVLPVIPVLFLLLALVWQASVSFR 42          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_CHLRE (Photosystem II reaction center protein K OS=Chlamydomonas reinhardtii GN=psbK PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 2
Query:  239 SFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            + + AKLPEAYA   PIVDV+PVIPV F LLAFVWQAAVSFR
Sbjct:    5 ALVLAKLPEAYAPFAPIVDVLPVIPVFFILLAFVWQAAVSFR 46          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SCEOB (Photosystem II reaction center protein K OS=Scenedesmus obliquus GN=psbK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 2
Query:  233 SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            S   + AKLPEAYA  +PIVDV+P+IP+ F LLAFVWQA+VSFR
Sbjct:    3 SMYLILAKLPEAYAPFDPIVDVLPIIPIFFLLLAFVWQASVSFR 46          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ODOSI (Photosystem II reaction center protein K OS=Odontella sinensis GN=psbK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 2
Query:  239 SFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            S L A+LPEAY   +PIVDV+P+IPV F LLAFVWQAA+ FR
Sbjct:    3 SLLLARLPEAYVVFSPIVDVLPIIPVFFLLLAFVWQAAIGFR 44          
The following BLAST results are available for this feature:
BLAST of DR404003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PSBK_CYAP43.325e-1175.00Photosystem II reaction center protein K OS=Cyanot... [more]
PSBK_THEEB4.343e-1177.50Photosystem II reaction center protein K OS=Thermo... [more]
PSBK_EUGGR4.343e-1156.36Photosystem II reaction center protein K OS=Euglen... [more]
PSBK_SYNP65.672e-1169.77Photosystem II reaction center protein K OS=Synech... [more]
PSBK_SYNE75.672e-1169.77Photosystem II reaction center protein K OS=Synech... [more]
PSBK_NOSP75.672e-1169.77Photosystem II reaction center protein K OS=Nostoc... [more]
PSBK_CHLVU5.672e-1180.00Photosystem II reaction center protein K OS=Chlore... [more]
PSBK_CHLRE5.672e-1176.19Photosystem II reaction center protein K OS=Chlamy... [more]
PSBK_SCEOB7.408e-1168.18Photosystem II reaction center protein K OS=Scened... [more]
PSBK_ODOSI7.408e-1169.05Photosystem II reaction center protein K OS=Odonte... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404003 ID=DR404003; Name=DR404003; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTT
GTTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCT
TTTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAA
TAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTT
TAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTC
GCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTAT
GCCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTG
CTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGAT
TTATTCTAGTTCGAAAAAAAAA
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