CX069722

Overview
NameCX069722
Unique NameCX069722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2111 contig Csv1_Contig2111:84..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.684e-34
Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = -3
Query:  257 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSWT 691
            + T A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   + +Y     E   +SWT
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.684e-34
Identity = 64/146 (43.84%), Postives = 96/146 (65.75%), Query Frame = -3
Query:  245 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 679
            +S+R+ KE  DL++ P        V +++FHW  T +GP DS YAGG F  ++ FP DYPF+PP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y+ DR  ++  AR + +++A
Sbjct:    8 SSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.134e-33
Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = -3
Query:  257 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSWT 691
            + T A KR++++ K LQ DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:    1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.935e-33
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = -3
Query:  242 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 673
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K++  +   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.300e-33
Identity = 63/149 (42.28%), Postives = 94/149 (63.09%), Query Frame = -3
Query:  260 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 691
            + T A +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:    1 MSTSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.300e-33
Identity = 65/145 (44.83%), Postives = 92/145 (63.45%), Query Frame = -3
Query:  245 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 676
            S+RI KEL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.310e-33
Identity = 63/149 (42.28%), Postives = 95/149 (63.76%), Query Frame = -3
Query:  260 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 691
            + T A +R++++ K +Q DPP   SA P+ +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  RSW
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.310e-33
Identity = 65/144 (45.14%), Postives = 94/144 (65.28%), Query Frame = -3
Query:  242 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 673
            KRI+KE++ L +DPP    A P  +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K +  +    AR WT+KYA+
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.629e-33
Identity = 62/151 (41.06%), Postives = 95/151 (62.91%), Query Frame = -3
Query:  254 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSWTQ 691
            + T A +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++Y+ +R +Y     ET  +SW +
Sbjct:    1 MSTSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          
BLAST of CX069722 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.602e-33
Identity = 67/143 (46.85%), Postives = 92/143 (64.34%), Query Frame = -3
Query:  245 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 673
            KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  +    +  AR WT+ YA
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
The following BLAST results are available for this feature:
BLAST of CX069722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_ARATH8.684e-3444.67Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC14_SCHPO8.684e-3443.84Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC2_MEDSA1.134e-3344.67Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBE2N_RAT1.935e-3346.53Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC2_ASPFU3.300e-3342.28Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC1_SCHPO3.300e-3344.83Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC2_TRIHA4.310e-3342.28Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC13_SCHPO4.310e-3345.14Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC2_EMENI5.629e-3341.06Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC13_YEAST9.602e-3346.85Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D07-H14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069722 ID=CX069722; Name=CX069722; organism=Citrus sinensis; type=EST; length=792bp
TTTTTTTTTTTTTTTTGGCTGACCAAGTGACATTATCAGAACACATTTGA
TTGACCAAAGTGACATTATCCATACAACAATTAAGAAGCAACCCGTTTCT
CCTTTCCAATTCGGGGGATGTAGTGGACCTTTCTTATGGTCCACTTTTTA
GGATTGAACAGACAGAATATTCATACATTAACTCGAAACCAGAATTAAAA
AGAAAAGGAACCCCCTCACACACCATAACCCAGGTTTAGCCCATGGCATA
CTTCTGGGTCCAGCTCCTTGCAGTTGTCTCGTACTTGTTCCTGTCGGTCT
TGTACATGTGAGCAATTTCTGGTACCAACGGATCATCGGGATTTGGATCC
GTCAATAATGAACAGATTGATAGCAACACCTTGGAAATGGTAAGAGCAGG
ACTCCATTGTTCCTTCAAGATGTCAAGGCAAATGCTCCCATTGCTATTTA
TGTTAGGATGAAATACCTTTGTCCTGAATGCTACCTTGGGAGGCTTGAAT
GGATAGTCTGGGGGAAAATGGATGGTAACTAGAAAAACACCCCCAGCATA
CGGACTATCTGGAGGACCCATGATTGTCGCCTGCCAATGAAACATGTCTT
CAGCAACAGGACCGGCACTGCATGATGTAGGAGGATCCTTCTGCAAATCT
TTGAGCTCCTTCAAGATCCGTTTCGACGCCATAGTTTCAACCTGAGAAGC
AGCAGATCCTCCTGATTTGGCCTTGCAATATGTGGATTCGTGAGGGAGAC
AGGGAGATCGGGAAAATTAGAAACAAAAACTGAGATACTCCT
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