CX069719

Overview
NameCX069719
Unique NameCX069719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:2564..3377. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SYNP2 (Cytochrome b6-f complex subunit 4 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.272e-15
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            I KKPDL+DP LRAKLA+ MGHNYYGEPAWPND+L+ FP+ I GTI
Sbjct:    3 IMKKPDLSDPKLRAKLAQNMGHNYYGEPAWPNDILFTFPICIAGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_BIGNA (Cytochrome b6-f complex subunit 4 OS=Bigelowiella natans GN=petD-A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.998e-13
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            + K+P L D  +R KL  GMGHNYYGEPAWPNDLLY+FPVVILGT+
Sbjct:    3 VVKEPTLADFYVRKKLYTGMGHNYYGEPAWPNDLLYMFPVVILGTL 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SYNJA (Cytochrome b6-f complex subunit 4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=petD PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.592e-12
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            IT+K DL++P + AKL K MGH  YGEPAWPNDLL++FPVVILGTI
Sbjct:   13 ITRKVDLDNPKVLAKLKKNMGHMTYGEPAWPNDLLFMFPVVILGTI 58          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SYNJB (Cytochrome b6-f complex subunit 4 OS=Synechococcus sp. GN=petD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            IT+K DL++P + AKL K MGH  YGEPAWPNDLL++FPVVILGTI
Sbjct:   13 ITRKVDLDNPKVVAKLKKNMGHMTYGEPAWPNDLLFMFPVVILGTI 58          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_AMPOP (Cytochrome b6-f complex subunit 4 OS=Amphidinium operculatum GN=petD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            + + P +   +L + LAKG GHNYYGEPAWPND+LYIFPVVILGTI
Sbjct:    2 VVRLPYVKGSILCSALAKGCGHNYYGEPAWPNDILYIFPVVILGTI 47          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_AMPCA (Cytochrome b6-f complex subunit 4 OS=Amphidinium carterae GN=petD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            + + P +   +L + LAKG GHNYYGEPAWPND+LYIFPVVILGTI
Sbjct:    2 VVRLPYVKGSILCSALAKGCGHNYYGEPAWPNDILYIFPVVILGTI 47          
The following BLAST results are available for this feature:
BLAST of CX069719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PETD_SYNP24.272e-1576.09Cytochrome b6-f complex subunit 4 OS=Synechococcus... [more]
PETD_BIGNA3.998e-1371.74Cytochrome b6-f complex subunit 4 OS=Bigelowiella ... [more]
PETD_SYNJA2.592e-1271.74Cytochrome b6-f complex subunit 4 OS=Synechococcus... [more]
PETD_SYNJB3.385e-1271.74Cytochrome b6-f complex subunit 4 OS=Synechococcus... [more]
PETD_AMPOP4.421e-1267.39Cytochrome b6-f complex subunit 4 OS=Amphidinium o... [more]
PETD_AMPCA4.421e-1267.39Cytochrome b6-f complex subunit 4 OS=Amphidinium c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069719 ID=CX069719; Name=CX069719; organism=Citrus sinensis; type=EST; length=814bp
CCAACCGGCACCCCATAGAGAGGATAGGTTGGTTCGATTGAAAAGAATCT
TTTCTATGATCAGCCCCAAGCATGCCGCGCATGAGCAGGCTCCGTAAGAT
CCAGTAGAATAAGCGATGTGGCATAATCTAGATTATGTTTTCGCTAGATT
CTAGATTACTTACTTAATAGTATGGAAATGCATTCATTTCTTCTGCACCG
ATCCCGATTTATGATACTATCGGAGTGAAACAAGGGGTCTAAAGAAGAGC
AGCGGCTAGACTATATTAGTAACAAGTAAATCCTTTGTACGCGAAAAAGA
AAAATCTCAGCTCGATCTTTTTTTTTTTTTTGTTTTTGGATAAGGGTGAA
TCACAAGGGCTGAGACGACCCAGAAAGCTCTTGATCATGATCAATTTTGT
AAGCCTACTTGGGTATGGAGCATACACCTGTAAGAACCGAATTCCTTGCA
ATTGATAGTTGAAACTTCGTAAAACGGAATCCGGTAATTTTACATATAGA
ATCATCCCGATATGCGTAAAATATAGATTTTCGAAAATCTATATTTCTTT
TTTTATCTATTTCTTTTTTTATATGTATCCTTTTAGTTTGGTTGATTCTT
GCTCGAGCCGGATGATGAAAAATTATCATGTCCGGTTCTTTGGGGGGATG
GATCTATAAGAATTCGCCTATCCCAATAACAAAAAAACCTGACTTGAATG
ATCCTGTATTAAGGGCTAAGTTGGCTAAGGGTATGGGTCATAATTATTAT
GGAGAACCCGCATGGCCCAACGATCTTTTATATATTTTTCCAGTAGTAAT
TCTAGGTACTATTG
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