CX069719

Overview
NameCX069719
Unique NameCX069719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_PSINU (Cytochrome b6-f complex subunit 4 OS=Psilotum nudum GN=petD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.523e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPV RAKLAKGMGHNYYGEPAWPNDLLYIFP+VILGTI
Sbjct:    3 VTKKPDLNDPVSRAKLAKGMGHNYYGEPAWPNDLLYIFPIVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_CHAVU (Cytochrome b6-f complex subunit 4 OS=Chara vulgaris GN=petD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.523e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDL DP+LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 VTKKPDLTDPILRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_CALFG (Cytochrome b6-f complex subunit 4 OS=Calycanthus floridus var. glaucus GN=petD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.825e-20
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYI PVVILGTI
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYISPVVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_WELMI (Cytochrome b6-f complex subunit 4 OS=Welwitschia mirabilis GN=petD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDL DPVLRA+LAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 VTKKPDLKDPVLRARLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_PICAB (Cytochrome b6-f complex subunit 4 OS=Picea abies GN=petD PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:  679 TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDL YIFPVVILGTI
Sbjct:    4 TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLSYIFPVVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_COLOB (Cytochrome b6-f complex subunit 4 OS=Coleochaete orbicularis GN=petD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDL DPVLRAKLAKGMGHNYYGEPAWPNDLLY+FPVVILGTI
Sbjct:    3 VTKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYMFPVVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_ADICA (Cytochrome b6-f complex subunit 4 OS=Adiantum capillus-veneris GN=petD PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1
Query:  682 KKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            KKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGT+
Sbjct:    4 KKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTV 47          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_ZYGCR (Cytochrome b6-f complex subunit 4 OS=Zygnema circumcarinatum GN=petD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.676e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDL DPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVI GTI
Sbjct:    3 VTKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVIFGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SPIMX (Cytochrome b6-f complex subunit 4 OS=Spirogyra maxima GN=petD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.676e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDL DPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVI GTI
Sbjct:    3 VTKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVIFGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_LIRTU (Cytochrome b6-f complex subunit 4 OS=Liriodendron tulipifera GN=petD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.676e-19
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYI PVVILGTI
Sbjct:    1 MTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYISPVVILGTI 46          
The following BLAST results are available for this feature:
BLAST of CX069719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PETD_PSINU7.523e-2093.48Cytochrome b6-f complex subunit 4 OS=Psilotum nudu... [more]
PETD_CHAVU7.523e-2093.48Cytochrome b6-f complex subunit 4 OS=Chara vulgari... [more]
PETD_CALFG9.825e-2095.65Cytochrome b6-f complex subunit 4 OS=Calycanthus f... [more]
PETD_WELMI1.283e-1993.48Cytochrome b6-f complex subunit 4 OS=Welwitschia m... [more]
PETD_PICAB1.283e-1997.78Cytochrome b6-f complex subunit 4 OS=Picea abies G... [more]
PETD_COLOB1.283e-1993.48Cytochrome b6-f complex subunit 4 OS=Coleochaete o... [more]
PETD_ADICA1.283e-1997.73Cytochrome b6-f complex subunit 4 OS=Adiantum capi... [more]
PETD_ZYGCR1.676e-1993.48Cytochrome b6-f complex subunit 4 OS=Zygnema circu... [more]
PETD_SPIMX1.676e-1993.48Cytochrome b6-f complex subunit 4 OS=Spirogyra max... [more]
PETD_LIRTU1.676e-1995.65Cytochrome b6-f complex subunit 4 OS=Liriodendron ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069719 ID=CX069719; Name=CX069719; organism=Citrus sinensis; type=EST; length=814bp
CCAACCGGCACCCCATAGAGAGGATAGGTTGGTTCGATTGAAAAGAATCT
TTTCTATGATCAGCCCCAAGCATGCCGCGCATGAGCAGGCTCCGTAAGAT
CCAGTAGAATAAGCGATGTGGCATAATCTAGATTATGTTTTCGCTAGATT
CTAGATTACTTACTTAATAGTATGGAAATGCATTCATTTCTTCTGCACCG
ATCCCGATTTATGATACTATCGGAGTGAAACAAGGGGTCTAAAGAAGAGC
AGCGGCTAGACTATATTAGTAACAAGTAAATCCTTTGTACGCGAAAAAGA
AAAATCTCAGCTCGATCTTTTTTTTTTTTTTGTTTTTGGATAAGGGTGAA
TCACAAGGGCTGAGACGACCCAGAAAGCTCTTGATCATGATCAATTTTGT
AAGCCTACTTGGGTATGGAGCATACACCTGTAAGAACCGAATTCCTTGCA
ATTGATAGTTGAAACTTCGTAAAACGGAATCCGGTAATTTTACATATAGA
ATCATCCCGATATGCGTAAAATATAGATTTTCGAAAATCTATATTTCTTT
TTTTATCTATTTCTTTTTTTATATGTATCCTTTTAGTTTGGTTGATTCTT
GCTCGAGCCGGATGATGAAAAATTATCATGTCCGGTTCTTTGGGGGGATG
GATCTATAAGAATTCGCCTATCCCAATAACAAAAAAACCTGACTTGAATG
ATCCTGTATTAAGGGCTAAGTTGGCTAAGGGTATGGGTCATAATTATTAT
GGAGAACCCGCATGGCCCAACGATCTTTTATATATTTTTCCAGTAGTAAT
TCTAGGTACTATTG
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