CX069719

Overview
NameCX069719
Unique NameCX069719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_GUITH (Cytochrome b6-f complex subunit 4 OS=Guillardia theta GN=petD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            + KKPDL DP LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGT+
Sbjct:    3 VLKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTL 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_CYAP7 (Cytochrome b6-f complex subunit 4 OS=Cyanothece sp. (strain PCC 7424) GN=petD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            + KKPDL+DP LRAKLAKGMGHNYYGEPAWPNDLLY+FPVVI+GTI
Sbjct:    3 VLKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYVFPVVIMGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_CYAP8 (Cytochrome b6-f complex subunit 4 OS=Cyanothece sp. (strain PCC 8801) GN=petD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            I KKPDL+DP LRAKLA+GMGHNYYGEPAWPNDLLY+FPVVILGTI
Sbjct:    3 IQKKPDLSDPKLRAKLAQGMGHNYYGEPAWPNDLLYVFPVVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_CYAA5 (Cytochrome b6-f complex subunit 4 OS=Cyanothece sp. (strain ATCC 51142) GN=petD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            I KKPDL+DP LRAKLA+GMGHNYYGEPAWPNDLLY+FPVVILGTI
Sbjct:    3 IEKKPDLSDPKLRAKLAQGMGHNYYGEPAWPNDLLYVFPVVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_TRIEI (Cytochrome b6-f complex subunit 4 OS=Trichodesmium erythraeum (strain IMS101) GN=petD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
Query:  682 KKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            KKPDL+DP LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVI+GTI
Sbjct:    5 KKPDLSDPQLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVIVGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_PROM4 (Cytochrome b6-f complex subunit 4 OS=Prochlorococcus marinus (strain MIT 9211) GN=petD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
Query:  682 KKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            KKPDL+DP LR+KLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    5 KKPDLSDPKLRSKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_MICAN (Cytochrome b6-f complex subunit 4 OS=Microcystis aeruginosa (strain NIES-843) GN=petD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1
Query:  682 KKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            KKPDL+DP LRAKLAKGMGHNYYGEPAWPNDLLY+FPVVI GTI
Sbjct:    5 KKPDLSDPALRAKLAKGMGHNYYGEPAWPNDLLYVFPVVIFGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_CHLMO (Cytochrome b6-f complex subunit 4 OS=Chlamydomonas moewusii GN=petD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGT 810
            +TKKPDLNDPVLRAKLAKG GHN YGEPAWPNDLLYIFPVVI GT
Sbjct:    3 VTKKPDLNDPVLRAKLAKGFGHNTYGEPAWPNDLLYIFPVVIFGT 47          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_MESVI (Cytochrome b6-f complex subunit 4 OS=Mesostigma viride GN=petD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.391e-18
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            + KKPDL DPVLRAKLAKGMGHNYYGEPAWPNDLLY FPV ILGTI
Sbjct:    3 LQKKPDLKDPVLRAKLAKGMGHNYYGEPAWPNDLLYTFPVCILGTI 48          
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_PROMM (Cytochrome b6-f complex subunit 4 OS=Prochlorococcus marinus (strain MIT 9313) GN=petD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGT 810
            I KKPD +DP LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGT
Sbjct:    3 ILKKPDFSDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGT 47          
The following BLAST results are available for this feature:
BLAST of CX069719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PETD_GUITH2.420e-1889.13Cytochrome b6-f complex subunit 4 OS=Guillardia th... [more]
PETD_CYAP72.420e-1886.96Cytochrome b6-f complex subunit 4 OS=Cyanothece sp... [more]
PETD_CYAP83.161e-1889.13Cytochrome b6-f complex subunit 4 OS=Cyanothece sp... [more]
PETD_CYAA53.161e-1889.13Cytochrome b6-f complex subunit 4 OS=Cyanothece sp... [more]
PETD_TRIEI4.128e-1893.18Cytochrome b6-f complex subunit 4 OS=Trichodesmium... [more]
PETD_PROM44.128e-1893.18Cytochrome b6-f complex subunit 4 OS=Prochlorococc... [more]
PETD_MICAN4.128e-1890.91Cytochrome b6-f complex subunit 4 OS=Microcystis a... [more]
PETD_CHLMO4.128e-1891.11Cytochrome b6-f complex subunit 4 OS=Chlamydomonas... [more]
PETD_MESVI5.391e-1889.13Cytochrome b6-f complex subunit 4 OS=Mesostigma vi... [more]
PETD_PROMM7.041e-1891.11Cytochrome b6-f complex subunit 4 OS=Prochlorococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069719 ID=CX069719; Name=CX069719; organism=Citrus sinensis; type=EST; length=814bp
CCAACCGGCACCCCATAGAGAGGATAGGTTGGTTCGATTGAAAAGAATCT
TTTCTATGATCAGCCCCAAGCATGCCGCGCATGAGCAGGCTCCGTAAGAT
CCAGTAGAATAAGCGATGTGGCATAATCTAGATTATGTTTTCGCTAGATT
CTAGATTACTTACTTAATAGTATGGAAATGCATTCATTTCTTCTGCACCG
ATCCCGATTTATGATACTATCGGAGTGAAACAAGGGGTCTAAAGAAGAGC
AGCGGCTAGACTATATTAGTAACAAGTAAATCCTTTGTACGCGAAAAAGA
AAAATCTCAGCTCGATCTTTTTTTTTTTTTTGTTTTTGGATAAGGGTGAA
TCACAAGGGCTGAGACGACCCAGAAAGCTCTTGATCATGATCAATTTTGT
AAGCCTACTTGGGTATGGAGCATACACCTGTAAGAACCGAATTCCTTGCA
ATTGATAGTTGAAACTTCGTAAAACGGAATCCGGTAATTTTACATATAGA
ATCATCCCGATATGCGTAAAATATAGATTTTCGAAAATCTATATTTCTTT
TTTTATCTATTTCTTTTTTTATATGTATCCTTTTAGTTTGGTTGATTCTT
GCTCGAGCCGGATGATGAAAAATTATCATGTCCGGTTCTTTGGGGGGATG
GATCTATAAGAATTCGCCTATCCCAATAACAAAAAAACCTGACTTGAATG
ATCCTGTATTAAGGGCTAAGTTGGCTAAGGGTATGGGTCATAATTATTAT
GGAGAACCCGCATGGCCCAACGATCTTTTATATATTTTTCCAGTAGTAAT
TCTAGGTACTATTG
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