CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CUCSA (30S ribosomal protein S11, chloroplastic OS=Cucumis sativus GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.547e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_VITVI (30S ribosomal protein S11, chloroplastic OS=Vitis vinifera GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PLAOC (30S ribosomal protein S11, chloroplastic OS=Platanus occidentalis GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGACGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PIPCE (30S ribosomal protein S11, chloroplastic OS=Piper cenocladum GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PANGI (30S ribosomal protein S11, chloroplastic OS=Panax ginseng GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_MANES (30S ribosomal protein S11, chloroplastic OS=Manihot esculenta GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTITDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ILLOL (30S ribosomal protein S11, chloroplastic OS=Illicium oligandrum GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGARRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_DRIGR (30S ribosomal protein S11, chloroplastic OS=Drimys granadensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   19 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_DAUCA (30S ribosomal protein S11, chloroplastic OS=Daucus carota GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CHLSC (30S ribosomal protein S11, chloroplastic OS=Chloranthus spicatus GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_CUCSA4.547e-2982.7230S ribosomal protein S11, chloroplastic OS=Cucumi... [more]
RR11_VITVI5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Vitis ... [more]
RR11_PLAOC5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Platan... [more]
RR11_PIPCE5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Piper ... [more]
RR11_PANGI5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Panax ... [more]
RR11_MANES5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Maniho... [more]
RR11_ILLOL5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Illici... [more]
RR11_DRIGR5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Drimys... [more]
RR11_DAUCA5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Daucus... [more]
RR11_CHLSC5.939e-2981.4830S ribosomal protein S11, chloroplastic OS=Chlora... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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