CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_PROM0 (30S ribosomal protein S11 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpsK PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV+H+Q++FNNTIV++TD  G VISWSSA            PFAAQTAA  A R   DQGM++ EV+++GPG GR+ A+R
Sbjct:   20 GVVHIQSTFNNTIVSITDTSGHVISWSSAGASGFKGARKGTPFAAQTAAEAAARRALDQGMRQIEVLVRGPGAGRETAIR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CRYJA (30S ribosomal protein S11, chloroplastic OS=Cryptomeria japonica GN=rps11 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQG-MQRAEVMIKGPGLGRDAALR 886
            KGVI+V+ASF NTIVTVTD RG+ +SWSSA            PFAAQTAA N +  + +QG ++ AEVMI GPG GRD ALR
Sbjct:   20 KGVIYVRASFRNTIVTVTDTRGQAVSWSSAGACGFKGTKRRSPFAAQTAAANVVDTLVNQGLLKEAEVMISGPGPGRDTALR 101          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CHAVU (30S ribosomal protein S11, chloroplastic OS=Chara vulgaris GN=rps11 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVT+TD+RG+VISWSS+             +AAQ A  NAI+   DQ  ++AEVM+ GPG GR+ ALR
Sbjct:   19 KGVIHIQASFNNTIVTITDLRGQVISWSSSGACGFKGAKKSTAYAAQIATENAIKQWTDQNTKQAEVMMSGPGPGRETALR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_PROM9 (30S ribosomal protein S11 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpsK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV+H+Q++FNNTIV++TD  G VISWSSA            PFAAQTAA  A R   DQGM++ EV+++GPG GR+ A+R
Sbjct:   20 GVVHIQSTFNNTIVSITDTSGHVISWSSAGASGFKGARKGTPFAAQTAAEAAARRALDQGMRQIEVLVRGPGSGRETAIR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_MICAN (30S ribosomal protein S11 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+Q++FNNTIVT+ D +G VISW+SA            PFAAQTAA NA R   +QGM++ EVM+ GPG GR+ A+R
Sbjct:   20 GVAHIQSTFNNTIVTIADTKGDVISWASAGSSGFKGAKKGTPFAAQTAADNAARRAIEQGMRQLEVMVSGPGAGRETAIR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_THEEB (30S ribosomal protein S11 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+Q++FNNTIV++TD  G VI+W+SA            PFAAQTAA NA R   DQGM++ EVM+ GPG GR+ A+R
Sbjct:   20 GVAHIQSTFNNTIVSITDPNGEVIAWASAGSSGFKGAKKGTPFAAQTAADNAARRAIDQGMRQIEVMVSGPGSGRETAIR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_SYNY3 (30S ribosomal protein S11 OS=Synechocystis sp. (strain PCC 6803) GN=rpsK PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+Q++FNNTIVT++D+RG VISW+SA            P+AAQTAA +A R   +QGM++ EVM+ GPG GR+ A+R
Sbjct:   20 GVAHIQSTFNNTIVTISDIRGDVISWASAGSSGFKGAKKGTPYAAQTAADSAARRAMEQGMRQLEVMVSGPGAGRETAIR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_SYNPX (30S ribosomal protein S11 OS=Synechococcus sp. (strain WH8102) GN=rpsK PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+Q++FNNTIV++TD  G VISWSSA            PFAAQTAA  A R   DQGM++ EV++KGPG GR+ A+R
Sbjct:   20 GVAHIQSTFNNTIVSITDTSGEVISWSSAGASGFKGARKGTPFAAQTAAEAAARRALDQGMRQIEVLVKGPGSGRETAIR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_DESOH (30S ribosomal protein S11 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.051e-17
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV+H+Q++FNNTIVTVTDV G VISWSSA            PFAAQ A+ +A++    QG+Q  EV +KGPG GR++ALR
Sbjct:   18 GVVHIQSTFNNTIVTVTDVAGNVISWSSAGGRGFKGSRKSTPFAAQMASEDAVKKAMAQGLQTVEVYVKGPGPGRESALR 97          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_PROM2 (30S ribosomal protein S11 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpsK PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.372e-17
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV+H+Q++FNNTIV+++D  G VISWSSA            PFAAQTAA  A R   DQGM++ EV+++GPG GR+ A+R
Sbjct:   20 GVVHIQSTFNNTIVSISDTSGHVISWSSAGASGFKGARKGTPFAAQTAAEAAARRALDQGMRQIEVLVRGPGAGRETAIR 99          
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS11_PROM04.717e-1853.7530S ribosomal protein S11 OS=Prochlorococcus marin... [more]
RR11_CRYJA4.717e-1858.5430S ribosomal protein S11, chloroplastic OS=Crypto... [more]
RR11_CHAVU4.717e-1856.7930S ribosomal protein S11, chloroplastic OS=Chara ... [more]
RS11_PROM96.160e-1853.7530S ribosomal protein S11 OS=Prochlorococcus marin... [more]
RS11_MICAN6.160e-1853.7530S ribosomal protein S11 OS=Microcystis aeruginos... [more]
RS11_THEEB8.045e-1853.7530S ribosomal protein S11 OS=Thermosynechococcus e... [more]
RS11_SYNY38.045e-1852.5030S ribosomal protein S11 OS=Synechocystis sp. (st... [more]
RS11_SYNPX8.045e-1855.0030S ribosomal protein S11 OS=Synechococcus sp. (st... [more]
RS11_DESOH1.051e-1755.0030S ribosomal protein S11 OS=Desulfococcus oleovor... [more]
RS11_PROM21.372e-1752.5030S ribosomal protein S11 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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