CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PHAVU (30S ribosomal protein S11, chloroplastic OS=Phaseolus vulgaris GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+IHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAE+MIKGPGLGRDAALR
Sbjct:   27 KGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PHAAN (30S ribosomal protein S11, chloroplastic OS=Phaseolus angularis GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+IHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAE+MIKGPGLGRDAALR
Sbjct:   27 KGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_OLIPU (30S ribosomal protein S11, chloroplastic OS=Olimarabidopsis pumila GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_NASOF (30S ribosomal protein S11, chloroplastic OS=Nasturtium officinale GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_LOBMA (30S ribosomal protein S11, chloroplastic OS=Lobularia maritima GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_LEPVR (30S ribosomal protein S11, chloroplastic OS=Lepidium virginicum GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_DRANE (30S ribosomal protein S11, chloroplastic OS=Draba nemorosa GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CRUWA (30S ribosomal protein S11, chloroplastic OS=Crucihimalaya wallichii GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CAPBU (30S ribosomal protein S11, chloroplastic OS=Capsella bursa-pastoris GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_BUXMI (30S ribosomal protein S11, chloroplastic OS=Buxus microphylla GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVMDQGMQRAEVMIKGPGLGRDAALR 107          
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_PHAVU7.756e-2979.0130S ribosomal protein S11, chloroplastic OS=Phaseo... [more]
RR11_PHAAN7.756e-2979.0130S ribosomal protein S11, chloroplastic OS=Phaseo... [more]
RR11_OLIPU7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Olimar... [more]
RR11_NASOF7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Nastur... [more]
RR11_LOBMA7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Lobula... [more]
RR11_LEPVR7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Lepidi... [more]
RR11_DRANE7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Draba ... [more]
RR11_CRUWA7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Crucih... [more]
RR11_CAPBU7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Capsel... [more]
RR11_BUXMI7.756e-2981.4830S ribosomal protein S11, chloroplastic OS=Buxus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
back to top