CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_BARVE (30S ribosomal protein S11, chloroplastic OS=Barbarea verna GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ARATH (30S ribosomal protein S11, chloroplastic OS=Arabidopsis thaliana GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ACOCL (30S ribosomal protein S11, chloroplastic OS=Acorus calamus GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 65/81 (80.25%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+IHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_LACSA (30S ribosomal protein S11, chloroplastic OS=Lactuca sativa GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.013e-28
Identity = 65/81 (80.25%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAG+AIRAV DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTSGFRGTKRGTPFAAQTAAGHAIRAVVDQGMQRAEVMIKGPGLGRDAALR 105          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ARAHI (30S ribosomal protein S11, chloroplastic OS=Arabis hirsuta GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.013e-28
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+IHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_HELAN (30S ribosomal protein S11, chloroplastic OS=Helianthus annuus GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.323e-28
Identity = 65/81 (80.25%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIRAV DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTCGFQGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDAALR 105          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_GUIAB (30S ribosomal protein S11, chloroplastic OS=Guizotia abyssinica GN=rps11 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.323e-28
Identity = 65/81 (80.25%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIRAV DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDAALR 105          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_AETGR (30S ribosomal protein S11, chloroplastic OS=Aethionema grandiflora GN=rps11 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.257e-28
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQG+QRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGIQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_AETCO (30S ribosomal protein S11, chloroplastic OS=Aethionema cordifolium GN=rps11 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.257e-28
Identity = 66/81 (81.48%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQG+QRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGIQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_TOBAC (30S ribosomal protein S11, chloroplastic OS=Nicotiana tabacum GN=rps11 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 65/81 (80.25%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_BARVE7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Barbar... [more]
RR11_ARATH7.756e-2982.7230S ribosomal protein S11, chloroplastic OS=Arabid... [more]
RR11_ACOCL7.756e-2980.2530S ribosomal protein S11, chloroplastic OS=Acorus... [more]
RR11_LACSA1.013e-2880.2530S ribosomal protein S11, chloroplastic OS=Lactuc... [more]
RR11_ARAHI1.013e-2881.4830S ribosomal protein S11, chloroplastic OS=Arabis... [more]
RR11_HELAN1.323e-2880.2530S ribosomal protein S11, chloroplastic OS=Helian... [more]
RR11_GUIAB1.323e-2880.2530S ribosomal protein S11, chloroplastic OS=Guizot... [more]
RR11_AETGR2.257e-2881.4830S ribosomal protein S11, chloroplastic OS=Aethio... [more]
RR11_AETCO2.257e-2881.4830S ribosomal protein S11, chloroplastic OS=Aethio... [more]
RR11_TOBAC2.947e-2880.2530S ribosomal protein S11, chloroplastic OS=Nicoti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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