CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SOLTU (30S ribosomal protein S11, chloroplastic OS=Solanum tuberosum GN=rps11 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 65/81 (80.25%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SOLLC (30S ribosomal protein S11, chloroplastic OS=Solanum lycopersicum GN=rps11 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 65/81 (80.25%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SOLBU (30S ribosomal protein S11, chloroplastic OS=Solanum bulbocastanum GN=rps11 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 65/81 (80.25%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_NICSY (30S ribosomal protein S11, chloroplastic OS=Nicotiana sylvestris GN=rps11 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 65/81 (80.25%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ATRBE (30S ribosomal protein S11, chloroplastic OS=Atropa belladonna GN=rps11 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 65/81 (80.25%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SPIOL (30S ribosomal protein S11, chloroplastic OS=Spinacia oleracea GN=rps11 PE=1 SV=4)

HSP 1 Score: 125.561 bits (314), Expect = 3.849e-28
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SW+SA            PFAAQTAAGNAIR V +QGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_NICTO (30S ribosomal protein S11, chloroplastic OS=Nicotiana tomentosiformis GN=rps11 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.576e-28
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTA  NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAVANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CERDE (30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum GN=rps11 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.576e-28
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRG+V+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGQVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_NYMAL (30S ribosomal protein S11, chloroplastic OS=Nymphaea alba GN=rps11 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.120e-27
Identity = 64/80 (80.00%), Postives = 66/80 (82.50%), Query Frame = 2
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GVIHVQASFNNTIVTVTD +GRV+SWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   28 GVIHVQASFNNTIVTVTDPQGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_LIRTU (30S ribosomal protein S11, chloroplastic OS=Liriodendron tulipifera GN=rps11 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.120e-27
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDV G+V+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVLGQVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_SOLTU2.947e-2880.2530S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_SOLLC2.947e-2880.2530S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_SOLBU2.947e-2880.2530S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_NICSY2.947e-2880.2530S ribosomal protein S11, chloroplastic OS=Nicoti... [more]
RR11_ATRBE2.947e-2880.2530S ribosomal protein S11, chloroplastic OS=Atropa... [more]
RR11_SPIOL3.849e-2879.0130S ribosomal protein S11, chloroplastic OS=Spinac... [more]
RR11_NICTO8.576e-2879.0130S ribosomal protein S11, chloroplastic OS=Nicoti... [more]
RR11_CERDE8.576e-2879.0130S ribosomal protein S11, chloroplastic OS=Cerato... [more]
RR11_NYMAL1.120e-2780.0030S ribosomal protein S11, chloroplastic OS=Nympha... [more]
RR11_LIRTU1.120e-2779.0130S ribosomal protein S11, chloroplastic OS=Liriod... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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