CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRZP (30S ribosomal protein S11 OS=Streptococcus pneumoniae (strain P1031) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRZJ (30S ribosomal protein S11 OS=Streptococcus pneumoniae (strain JJA) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRSY (30S ribosomal protein S11 OS=Streptococcus suis (strain 05ZYH33) GN=rpsK PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKTVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRSV (30S ribosomal protein S11 OS=Streptococcus sanguinis (strain SK36) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRS2 (30S ribosomal protein S11 OS=Streptococcus suis (strain 98HAH33) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKTVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRR6 (30S ribosomal protein S11 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRPS (30S ribosomal protein S11 OS=Streptococcus pneumoniae (strain CGSP14) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRPN (30S ribosomal protein S11 OS=Streptococcus pneumoniae GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRPJ (30S ribosomal protein S11 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIR 96
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_STRPI (30S ribosomal protein S11 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            G+ H+ A+FNNTIV +TDV G  I+WSSA            PFAAQ A+  A ++  + G++  EV +KGPG GR++A+R
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIR 96
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS11_STRZP4.132e-1445.0030S ribosomal protein S11 OS=Streptococcus pneumon... [more]
RS11_STRZJ4.132e-1445.0030S ribosomal protein S11 OS=Streptococcus pneumon... [more]
RS11_STRSY4.132e-1445.0030S ribosomal protein S11 OS=Streptococcus suis (s... [more]
RS11_STRSV4.132e-1445.0030S ribosomal protein S11 OS=Streptococcus sanguin... [more]
RS11_STRS24.132e-1445.0030S ribosomal protein S11 OS=Streptococcus suis (s... [more]
RS11_STRR64.132e-1445.0030S ribosomal protein S11 OS=Streptococcus pneumon... [more]
RS11_STRPS4.132e-1445.0030S ribosomal protein S11 OS=Streptococcus pneumon... [more]
RS11_STRPN4.132e-1445.0030S ribosomal protein S11 OS=Streptococcus pneumon... [more]
RS11_STRPJ4.132e-1445.0030S ribosomal protein S11 OS=Streptococcus pneumon... [more]
RS11_STRPI4.132e-1445.0030S ribosomal protein S11 OS=Streptococcus pneumon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
back to top