CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECOLC (30S ribosomal protein S11 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECOL6 (30S ribosomal protein S11 OS=Escherichia coli O6 GN=rpsK PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECOL5 (30S ribosomal protein S11 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECOK1 (30S ribosomal protein S11 OS=Escherichia coli O1:K1 / APEC GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECOHS (30S ribosomal protein S11 OS=Escherichia coli O9:H4 (strain HS) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECODH (30S ribosomal protein S11 OS=Escherichia coli (strain K12 / DH10B) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECOBW (30S ribosomal protein S11 OS=Escherichia coli (strain K12 / BW2952) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECO8A (30S ribosomal protein S11 OS=Escherichia coli O8 (strain IAI1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECO81 (30S ribosomal protein S11 OS=Escherichia coli O81 (strain ED1a) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RS11_ECO7I (30S ribosomal protein S11 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  647 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            GV H+ ASFNNTIVT+TD +G  + W++A            PFAAQ AA     AV + G++  EVM+KGPG GR++ +R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIR 98
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS11_ECOLC5.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli (str... [more]
RS11_ECOL65.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli O6 G... [more]
RS11_ECOL55.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli O6:K... [more]
RS11_ECOK15.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli O1:K... [more]
RS11_ECOHS5.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli O9:H... [more]
RS11_ECODH5.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli (str... [more]
RS11_ECOBW5.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli (str... [more]
RS11_ECO8A5.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli O8 (... [more]
RS11_ECO815.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli O81 ... [more]
RS11_ECO7I5.397e-1446.2530S ribosomal protein S11 OS=Escherichia coli O7:K... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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