CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_COFAR (30S ribosomal protein S11, chloroplastic OS=Coffea arabica GN=rps11 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.120e-27
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASF+NTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFHNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_NANDO (30S ribosomal protein S11, chloroplastic OS=Nandina domestica GN=rps11 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 63/81 (77.78%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTD+RGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDIRGRVVSWSSAGTCGFRGTRRGTPFAAQTAASNAIRTVVDQGMQRAEVRIKGPGLGRDAALR 107
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CALFG (30S ribosomal protein S11, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps11 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDV GRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVTGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRTVIDQGMQRAEVMIKGPGLGRDAALR 107
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_AMBTC (30S ribosomal protein S11, chloroplastic OS=Amborella trichopoda GN=rps11 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SW SA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWCSAGTCGFRGTRRGTPFAAQTAATNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_FAGEA (30S ribosomal protein S11, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps11 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27
Identity = 63/81 (77.78%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVI+VQA FNNTIVTVTDVRGRV+SW+SA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIYVQAGFNNTIVTVTDVRGRVVSWASAGTCGFKGAKRGTPFAAQTAAGNAIRKVVDQGMQRAEVMIKGPGLGRDAALR 107
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CICAR (30S ribosomal protein S11, chloroplastic OS=Cicer arietinum GN=rps11 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.259e-27
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVI+VQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAA NAIR V DQGMQRAEV+IKGPGLGRDAALR
Sbjct:   27 KGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVIIKGPGLGRDAALR 107
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_OENPA (30S ribosomal protein S11, chloroplastic OS=Oenothera parviflora GN=rps11 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALR
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALR 113
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_OENGL (30S ribosomal protein S11, chloroplastic OS=Oenothera glazioviana GN=rps11 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALR
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALR 113
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_OENEH (30S ribosomal protein S11, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps11 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALR
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALR 113
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_OENBI (30S ribosomal protein S11, chloroplastic OS=Oenothera biennis GN=rps11 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALR
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALR 113
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_COFAR1.120e-2779.0130S ribosomal protein S11, chloroplastic OS=Coffea... [more]
RR11_NANDO1.910e-2777.7830S ribosomal protein S11, chloroplastic OS=Nandin... [more]
RR11_CALFG1.910e-2779.0130S ribosomal protein S11, chloroplastic OS=Calyca... [more]
RR11_AMBTC1.910e-2779.0130S ribosomal protein S11, chloroplastic OS=Ambore... [more]
RR11_FAGEA2.495e-2777.7830S ribosomal protein S11, chloroplastic OS=Fagopy... [more]
RR11_CICAR3.259e-2779.0130S ribosomal protein S11, chloroplastic OS=Cicer ... [more]
RR11_OENPA4.256e-2779.0130S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_OENGL4.256e-2779.0130S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_OENEH4.256e-2779.0130S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_OENBI4.256e-2779.0130S ribosomal protein S11, chloroplastic OS=Oenoth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
back to top