CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069718_ssr178 microsatellite CX069718_ssr178:178..189. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig4306 contig Csv1_Contig4306:1..887. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_OENAR (30S ribosomal protein S11, chloroplastic OS=Oenothera argillicola GN=rps11 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALR
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALR 113          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PEA (30S ribosomal protein S11, chloroplastic OS=Pisum sativum GN=rps11 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVI++QASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAI+ V +QGMQRAEV IKGPGLGRDAALR
Sbjct:   27 KGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAGNAIQTVVEQGMQRAEVRIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_IPOPU (30S ribosomal protein S11, chloroplastic OS=Ipomoea purpurea GN=rps11 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 62/81 (76.54%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAA+TAA NAIR V D+GM RAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAETAASNAIRTVVDRGMLRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_LEMMI (30S ribosomal protein S11, chloroplastic OS=Lemna minor GN=rps11 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.617e-26
Identity = 62/81 (76.54%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+IHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQ+AA NAIR V DQGMQRAEVMIKGPG GRDAALR
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGAKRGTPFAAQSAAVNAIRTVVDQGMQRAEVMIKGPGPGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PHAAO (30S ribosomal protein S11, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps11 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 61/81 (75.31%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRV+SW+SA            P+AAQ AA NAIR + DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWASAGTSGFRGTRKGTPYAAQAAAFNAIRTLVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CUSRE (Plastid 30S ribosomal protein S11 OS=Cuscuta reflexa GN=rps11 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 62/81 (76.54%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASF+NTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGM RAEV+IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFHNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAATNAIRTVVDQGMLRAEVLIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CUSEX (Plastid 30S ribosomal protein S11 OS=Cuscuta exaltata GN=rps11 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.203e-25
Identity = 60/81 (74.07%), Postives = 63/81 (77.78%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASF+NTIV VTDVRGRV+SWSSA            PFAAQTAA  AIR V DQGM RAEV+IKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFHNTIVAVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAATKAIRTVVDQGMLRAEVLIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CYCTA (30S ribosomal protein S11, chloroplastic OS=Cycas taitungensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.795e-25
Identity = 59/81 (72.84%), Postives = 63/81 (77.78%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRG+V+SWSSA            PFAAQTAA NAIR + DQGM+RAEVMI GPG GRD ALR
Sbjct:   19 KGVIHVQASFNNTIVTVTDVRGQVVSWSSAGACGFKGTKRSTPFAAQTAAENAIRTLMDQGMERAEVMISGPGPGRDTALR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_MARPO (30S ribosomal protein S11, chloroplastic OS=Marchantia polymorpha GN=rps11 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVTVTD+RG+V+SWSSA            PFAAQTAA NAIR + DQGM++AEVMI GPG GRD ALR
Sbjct:   19 KGVIHIQASFNNTIVTVTDIRGQVVSWSSAGACGFKGTKKSTPFAAQTAAENAIRILIDQGMKQAEVMISGPGPGRDTALR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ANGEV (30S ribosomal protein S11, chloroplastic OS=Angiopteris evecta GN=rps11 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVTVTD+RG+V+SWSSA            PFAAQTAA NAIR + DQGM++AEVMI GPG GR+ ALR
Sbjct:   19 KGVIHIQASFNNTIVTVTDIRGQVVSWSSAGACGFKGTRKSTPFAAQTAAENAIRTLIDQGMKQAEVMISGPGPGRETALR 99          
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_OENAR4.256e-2779.0130S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_PEA1.238e-2676.5430S ribosomal protein S11, chloroplastic OS=Pisum ... [more]
RR11_IPOPU1.238e-2676.5430S ribosomal protein S11, chloroplastic OS=Ipomoe... [more]
RR11_LEMMI1.617e-2676.5430S ribosomal protein S11, chloroplastic OS=Lemna ... [more]
RR11_PHAAO2.759e-2675.3130S ribosomal protein S11, chloroplastic OS=Phalae... [more]
RR11_CUSRE2.759e-2676.54Plastid 30S ribosomal protein S11 OS=Cuscuta refle... [more]
RR11_CUSEX5.203e-2574.07Plastid 30S ribosomal protein S11 OS=Cuscuta exalt... [more]
RR11_CYCTA6.795e-2572.8430S ribosomal protein S11, chloroplastic OS=Cycas ... [more]
RR11_MARPO5.752e-2469.1430S ribosomal protein S11, chloroplastic OS=Marcha... [more]
RR11_ANGEV1.281e-2367.9030S ribosomal protein S11, chloroplastic OS=Angiop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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