CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PHYPA (30S ribosomal protein S11, chloroplastic OS=Physcomitrella patens GN=rps11 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVTVTD+RG+V+ WSSA            PFAAQTAA NAIR + DQGM++AEVMI GPG GRD ALR
Sbjct:   19 KGVIHIQASFNNTIVTVTDIRGQVVFWSSAGACGFKGAKKSTPFAAQTAAENAIRVLIDQGMKQAEVMISGPGPGRDTALR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_DIOEL (30S ribosomal protein S11, chloroplastic OS=Dioscorea elephantipes GN=rps11 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 57/81 (70.37%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTV+DVRG+VISW+SA            P+AAQ AA NAIR + DQ MQRAEVMIKG G GRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVSDVRGQVISWASAGTSGFKGTRRGTPYAAQAAAVNAIRTIIDQDMQRAEVMIKGAGFGRDAALR 107
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CHAGL (30S ribosomal protein S11, chloroplastic OS=Chaetosphaeridium globosum GN=rps11 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVT+TDVRG+VISWSSA            PFAAQTAA  A+R + DQGM++AEVMI GPG GRD ALR
Sbjct:   19 KGVIHIQASFNNTIVTITDVRGQVISWSSAGACGFKGAKKSTPFAAQTAAEKALRPLIDQGMRQAEVMISGPGRGRDTALR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ZYGCR (30S ribosomal protein S11, chloroplastic OS=Zygnema circumcarinatum GN=rps11 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.729e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+T+TDVRG+VISWSSA            PFAAQ AA NA+R + DQGM++AEVM+ GPG GRD ALR
Sbjct:   19 KGVIHVQASFNNTIITITDVRGQVISWSSAGASGFKAAKKSTPFAAQIAAENALRVLIDQGMKQAEVMLSGPGRGRDTALR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ANTFO (30S ribosomal protein S11, chloroplastic OS=Anthoceros formosae GN=rps11 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.870e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            +GV H+QASFNNTI+TVTDVRG+V+SWSSA            PFAAQTAA NAIR + DQGM++AEVMI GPG GRD ALR
Sbjct:   19 RGVTHIQASFNNTIITVTDVRGQVVSWSSAGACGFKGTKKSTPFAAQTAAENAIRILIDQGMKQAEVMISGPGPGRDTALR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_MESVI (30S ribosomal protein S11, chloroplastic OS=Mesostigma viride GN=rps11 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.360e-23
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGV+HVQA+FNNTIVT+TDVRG V+SWSSA            PFAAQTAA NA+R V DQGM++AE+MI GPG GR+ A+R
Sbjct:   19 KGVVHVQATFNNTIVTITDVRGEVLSWSSAGACGFKGTKKGTPFAAQTAAENAVRQVIDQGMKQAEIMISGPGSGRETAIR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_STAPU (30S ribosomal protein S11, chloroplastic OS=Staurastrum punctulatum GN=rps11 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.306e-23
Identity = 56/81 (69.14%), Postives = 61/81 (75.31%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRG+ +SWSSA            PFAAQTAA NAI  + DQGM++AEVMI GPG GRD ALR
Sbjct:   19 KGVIHVQASFNNTIVTVTDVRGQTMSWSSAGSCGFKGAKKSTPFAAQTAAENAISLLIDQGMRQAEVMISGPGPGRDTALR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PINTH (30S ribosomal protein S11, chloroplastic OS=Pinus thunbergii GN=rps11 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.306e-23
Identity = 55/81 (67.90%), Postives = 61/81 (75.31%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVI+VQASFNNTIVT TDVRG+V+SWSSA            PFAAQTAA N IRA+ D+GM+R EVMI GPG GRD ALR
Sbjct:   19 KGVIYVQASFNNTIVTATDVRGQVLSWSSAGACGFKGTRRGTPFAAQTAAENVIRALMDRGMERVEVMISGPGRGRDTALR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ANEMR (30S ribosomal protein S11, plastid OS=Aneura mirabilis GN=rps11 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.306e-23
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            +GVIH+QASFNNTI+TVTD RGRV+SWSSA            PFAAQTAA NAIR + D+G+++AEVMI GPG GRD ALR
Sbjct:   19 RGVIHIQASFNNTIITVTDTRGRVVSWSSAGACGFKGARKSTPFAAQTAAENAIRILIDRGLKQAEVMISGPGPGRDTALR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CUSOB (Plastid 30S ribosomal protein S11 OS=Cuscuta obtusiflora GN=rps11 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.156e-22
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            +GVIH+QAS  NTIVTVTDVRGRV+SW+SA            PFAAQTAA NAI    +QGM+ A+V+IKGPGLGRDAALR
Sbjct:   27 QGVIHIQASLQNTIVTVTDVRGRVVSWASAGSAGFKGTTRRTPFAAQTAATNAIHTAINQGMREADVLIKGPGLGRDAALR 107
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_PHYPA2.186e-2367.9030S ribosomal protein S11, chloroplastic OS=Physco... [more]
RR11_DIOEL2.186e-2370.3730S ribosomal protein S11, chloroplastic OS=Diosco... [more]
RR11_CHAGL2.855e-2367.9030S ribosomal protein S11, chloroplastic OS=Chaeto... [more]
RR11_ZYGCR3.729e-2366.6730S ribosomal protein S11, chloroplastic OS=Zygnem... [more]
RR11_ANTFO4.870e-2366.6730S ribosomal protein S11, chloroplastic OS=Anthoc... [more]
RR11_MESVI6.360e-2364.2030S ribosomal protein S11, chloroplastic OS=Mesost... [more]
RR11_STAPU8.306e-2369.1430S ribosomal protein S11, chloroplastic OS=Staura... [more]
RR11_PINTH8.306e-2367.9030S ribosomal protein S11, chloroplastic OS=Pinus ... [more]
RR11_ANEMR8.306e-2365.4330S ribosomal protein S11, plastid OS=Aneura mirab... [more]
RR11_CUSOB3.156e-2265.43Plastid 30S ribosomal protein S11 OS=Cuscuta obtus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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