CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CUSGR (Plastid 30S ribosomal protein S11 OS=Cuscuta gronovii GN=rps11 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.156e-22
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            +GVIH+QAS  NTIVTVTDVRGRV+SW+SA            PFAAQTAA NAIR   + GM+ A+V+IKGPGLGRDAALR
Sbjct:   27 QGVIHIQASLQNTIVTVTDVRGRVVSWASAGSAGFKGTTRRTPFAAQTAATNAIRTAINHGMREADVLIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ADICA (30S ribosomal protein S11, chloroplastic OS=Adiantum capillus-veneris GN=rps11 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.384e-22
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTI+TVTDVRG+VI WSSA            PFAAQ AA NAI+A  D+GM++AEVM+ GPG GRD ALR
Sbjct:   19 KGVIHIQASFNNTIITVTDVRGQVIIWSSAGACGFKGTRKSTPFAAQAAAENAIKASVDRGMKQAEVMMSGPGPGRDTALR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_EPIVI (Plastid 30S ribosomal protein S11 OS=Epifagus virginiana GN=rps11 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.032e-22
Identity = 56/81 (69.14%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQ SFNNTIV VTD++GRV+SWSSA             FAAQ AA NAIR V  QGMQRAEVMIKGPG+GRDA LR
Sbjct:   27 KGVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTRRGTSFAAQIAATNAIRIV--QGMQRAEVMIKGPGIGRDAVLR 105          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PINKO (30S ribosomal protein S11, chloroplastic OS=Pinus koraiensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.199e-21
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVI+VQASFNNTIVT TDVRG+VISWSSA            PFAAQTAA N IR + D+G+ R EVMI GPG GRD ALR
Sbjct:   19 KGVIYVQASFNNTIVTATDVRGQVISWSSAGACGFKGTRRGTPFAAQTAAENVIRTLMDRGIGRVEVMISGPGRGRDTALR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_MARQU (30S ribosomal protein S11, chloroplastic OS=Marsilea quadrifolia GN=rps11 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+IH+QA FNNTI+TVTDVRG+VI WSSA            PFAAQ AA NA+RA  D+G+++AEVMI GPG GRD ALR
Sbjct:   19 KGIIHIQAGFNNTIITVTDVRGQVILWSSAGACGFKGTRRSTPFAAQAAAENAVRASMDRGLKQAEVMISGPGPGRDTALR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_HUPLU (30S ribosomal protein S11, chloroplastic OS=Huperzia lucidula GN=rps11 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.672e-21
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQ-GMQRAEVMIKGPGLGRDAALR 886
            KGVIH+QASFNNTIVTVTDVRG+ +SWSSA            PFAAQTAA NAIR + DQ GM++AE+++KGPG GRD A R
Sbjct:   20 KGVIHIQASFNNTIVTVTDVRGQAVSWSSAGACGSRGTKKSTPFAAQTAAENAIRMLIDQGGMEQAEIIMKGPGPGRDTASR 101          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CHLAT (30S ribosomal protein S11, chloroplastic OS=Chlorokybus atmophyticus GN=rps11 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.774e-21
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGV+HVQA+FNNTIVT+TD++G VISWSSA            PFAAQTAA NA+R   +QGM+ AE+ + GPG GR+ A+R
Sbjct:   19 KGVVHVQATFNNTIVTITDIKGEVISWSSAGSCGFKGTKKGTPFAAQTAAENAVRQAIEQGMKEAEITVSGPGSGRETAIR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SPIMX (30S ribosomal protein S11, chloroplastic OS=Spirogyra maxima GN=rps11 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            K +IHVQASFNNTIVTVTDV+G+VIS  SA            PFAAQTAA NAIR + DQG+++AEVMI GPG GRD ALR
Sbjct:   19 KAIIHVQASFNNTIVTVTDVQGQVISSCSAGACGFKGAKKNTPFAAQTAAENAIRLLIDQGLKQAEVMISGPGRGRDTALR 99          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PELHO (30S ribosomal protein S11, chloroplastic OS=Pelargonium hortorum GN=rps11 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.501e-19
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+IHVQASF+NTIVTVTDV GRV++ +SA            PFAAQT A NAIR V  QGM RA V++KG G GRDAALR
Sbjct:   29 KGIIHVQASFSNTIVTVTDVGGRVVTSASAGACGFKGRRRGTPFAAQTTAENAIRTVVTQGMHRAVVLVKGVGRGRDAALR 109          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_JASNU (30S ribosomal protein S11, chloroplastic OS=Jasminum nudiflorum GN=rps11 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.501e-19
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            +GVIH+Q SF+NTIVTVTD RG+V+SWSSA            PFAAQ  A +AI  V DQG+QRA++ +KG G GRDAALR
Sbjct:   35 RGVIHIQTSFHNTIVTVTDGRGQVVSWSSAGTCRFKGPRKRTPFAAQIVAADAIGPVVDQGLQRAKIKLKGTGRGRDAALR 115          
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_CUSGR3.156e-2265.43Plastid 30S ribosomal protein S11 OS=Cuscuta grono... [more]
RR11_ADICA5.384e-2265.4330S ribosomal protein S11, chloroplastic OS=Adiant... [more]
RR11_EPIVI7.032e-2269.14Plastid 30S ribosomal protein S11 OS=Epifagus virg... [more]
RR11_PINKO1.199e-2166.6730S ribosomal protein S11, chloroplastic OS=Pinus ... [more]
RR11_MARQU1.567e-2162.9630S ribosomal protein S11, chloroplastic OS=Marsil... [more]
RR11_HUPLU2.672e-2164.6330S ribosomal protein S11, chloroplastic OS=Huperz... [more]
RR11_CHLAT7.774e-2158.0230S ribosomal protein S11, chloroplastic OS=Chloro... [more]
RR11_SPIMX1.326e-2065.4330S ribosomal protein S11, chloroplastic OS=Spirog... [more]
RR11_PELHO2.501e-1962.9630S ribosomal protein S11, chloroplastic OS=Pelarg... [more]
RR11_JASNU2.501e-1959.2630S ribosomal protein S11, chloroplastic OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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