CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_NEPOL (30S ribosomal protein S11, chloroplastic OS=Nephroselmis olivacea GN=rps11 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.266e-19
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGV+H+QASFNNTIVT+TD  G V++WSSA            PFAAQTAA  AIR   DQGM++A+++++GPG GR+ A+R
Sbjct:   19 KGVVHIQASFNNTIVTITDSSGGVLAWSSAGACGFRGAKKGTPFAAQTAAETAIRQCIDQGMRQADIIVQGPGNGRETAIR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PSINU (30S ribosomal protein S11, chloroplastic OS=Psilotum nudum GN=rps11 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+I ++ASFNNTIVTVT+ +G+VI+WSSA            PFAAQ A  NAIR +  QGM++AEVMI GPG GRD ALR
Sbjct:   19 KGIIQIKASFNNTIVTVTNSQGQVITWSSAGACGFKGTKRSTPFAAQIATENAIRTLISQGMKQAEVMISGPGPGRDTALR 99
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_WHEAT (30S ribosomal protein S11, chloroplastic OS=Triticum aestivum GN=rps11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+TVTD +GRV+ WSSA            P+A Q  A +AIR V   G+QRAEVM+KG G GRDAALR
Sbjct:   35 KGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTV---GLQRAEVMVKGAGSGRDAALR 112
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SORBI (30S ribosomal protein S11, chloroplastic OS=Sorghum bicolor GN=rps11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+TVTD +GRV+ WSSA            P+A Q  A +AIR V   G+QRAEVM+KG G GRDAALR
Sbjct:   35 KGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTV---GLQRAEVMVKGAGSGRDAALR 112
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SACOF (30S ribosomal protein S11, chloroplastic OS=Saccharum officinarum GN=rps11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+TVTD +GRV+ WSSA            P+A Q  A +AIR V   G+QRAEVM+KG G GRDAALR
Sbjct:   35 KGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTV---GLQRAEVMVKGAGSGRDAALR 112
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SACHY (30S ribosomal protein S11, chloroplastic OS=Saccharum hybrid GN=rps11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+TVTD +GRV+ WSSA            P+A Q  A +AIR V   G+QRAEVM+KG G GRDAALR
Sbjct:   35 KGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTV---GLQRAEVMVKGAGSGRDAALR 112
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_PENAM (30S ribosomal protein S11, chloroplastic OS=Pennisetum americanum GN=rps11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+TVTD +GRV+ WSSA            P+A Q  A +AIR V   G+QRAEVM+KG G GRDAALR
Sbjct:   35 KGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTV---GLQRAEVMVKGAGSGRDAALR 112
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ORYSJ (30S ribosomal protein S11, chloroplastic OS=Oryza sativa subsp. japonica GN=rps11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+TVTD +GRV+ WSSA            P+A Q  A +AIR V   G+QRAEVM+KG G GRDAALR
Sbjct:   35 KGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTV---GLQRAEVMVKGAGSGRDAALR 112
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ORYSI (30S ribosomal protein S11, chloroplastic OS=Oryza sativa subsp. indica GN=rps11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+TVTD +GRV+ WSSA            P+A Q  A +AIR V   G+QRAEVM+KG G GRDAALR
Sbjct:   35 KGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTV---GLQRAEVMVKGAGSGRDAALR 112
[Close]
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_ORYSA (30S ribosomal protein S11, chloroplastic OS=Oryza sativa GN=rps11 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTI+TVTD +GRV+ WSSA            P+A Q  A +AIR V   G+QRAEVM+KG G GRDAALR
Sbjct:   35 KGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTV---GLQRAEVMVKGAGSGRDAALR 112
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_NEPOL4.266e-1955.5630S ribosomal protein S11, chloroplastic OS=Nephro... [more]
RR11_PSINU7.277e-1959.2630S ribosomal protein S11, chloroplastic OS=Psilot... [more]
RR11_WHEAT2.117e-1861.7330S ribosomal protein S11, chloroplastic OS=Tritic... [more]
RR11_SORBI2.117e-1861.7330S ribosomal protein S11, chloroplastic OS=Sorghu... [more]
RR11_SACOF2.117e-1861.7330S ribosomal protein S11, chloroplastic OS=Saccha... [more]
RR11_SACHY2.117e-1861.7330S ribosomal protein S11, chloroplastic OS=Saccha... [more]
RR11_PENAM2.117e-1861.7330S ribosomal protein S11, chloroplastic OS=Pennis... [more]
RR11_ORYSJ2.117e-1861.7330S ribosomal protein S11, chloroplastic OS=Oryza ... [more]
RR11_ORYSI2.117e-1861.7330S ribosomal protein S11, chloroplastic OS=Oryza ... [more]
RR11_ORYSA2.117e-1861.7330S ribosomal protein S11, chloroplastic OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
back to top