CX069713

Overview
NameCX069713
Unique NameCX069713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   97 ESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  105 EAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  102 ESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  100 ESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   91 EAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   91 EAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   97 ESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  105 ESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  105 ESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  105 ESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
The following BLAST results are available for this feature:
BLAST of CX069713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B7_ARATH3.379e-1995.92Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ORYSJ3.379e-1995.92Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B6_ARATH3.379e-1995.92Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B1_ARATH3.379e-1995.92Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B11_ORYSJ3.379e-1995.92Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI3.379e-1995.92Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B10_ARATH3.379e-1995.92Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B8_ORYSJ7.528e-1993.88Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI7.528e-1993.88Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI7.528e-1993.88Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069713 ID=CX069713; Name=CX069713; organism=Citrus sinensis; type=EST; length=384bp
GGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTC
GGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAG
CACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTG
AAGGAAGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTG
TAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGT
TTTGTGTTTTCAAATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACT
AGAAATTTGGACCTGATCCAGGTGATGTGCATGTTCATTATGTTAGAATA
TGAAAATGAAATATGATTTCGGAAAAAAAAAAAA
back to top