CX069713

Overview
NameCX069713
Unique NameCX069713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1A_MOUSE (Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   78 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_OLILU (Histone H2B OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.163e-17
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLARYNK+ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTKFTS+
Sbjct:   66 EASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_MARGL (Histone H2B, sperm OS=Marthasterias glacialis PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.163e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   72 EASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 120          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_ASTRU (Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.163e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   73 EASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_ASTPE (Histone H2B OS=Asterina pectinifera PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.163e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   73 EASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BL3_STRPU (Late histone H2B.L3 OS=Strongylocentrotus purpuratus PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.163e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   74 EASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.163e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.163e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.163e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B6_WHEAT (Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.131e-17
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFT 142
            E+++LARYNKKPTITSREIQTAVRLV PGELAKHAVSEGTKAVT+FT
Sbjct:   73 ESAKLARYNKKPTITSREIQTAVRLVFPGELAKHAVSEGTKAVTRFT 119          
The following BLAST results are available for this feature:
BLAST of CX069713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B1A_MOUSE2.422e-1789.80Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba ... [more]
H2B_OLILU3.163e-1787.76Histone H2B OS=Olisthodiscus luteus PE=1 SV=2[more]
H2B_MARGL3.163e-1787.76Histone H2B, sperm OS=Marthasterias glacialis PE=1... [more]
H2B_ASTRU3.163e-1787.76Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2[more]
H2B_ASTPE3.163e-1787.76Histone H2B OS=Asterina pectinifera PE=1 SV=2[more]
H2BL3_STRPU3.163e-1787.76Late histone H2B.L3 OS=Strongylocentrotus purpurat... [more]
H2B3B_MOUSE3.163e-1787.76Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN3.163e-1787.76Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]
H2B3A_MOUSE3.163e-1787.76Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ... [more]
H2B6_WHEAT4.131e-1789.36Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069713 ID=CX069713; Name=CX069713; organism=Citrus sinensis; type=EST; length=384bp
GGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTC
GGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAG
CACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTG
AAGGAAGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTG
TAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGT
TTTGTGTTTTCAAATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACT
AGAAATTTGGACCTGATCCAGGTGATGTGCATGTTCATTATGTTAGAATA
TGAAAATGAAATATGATTTCGGAAAAAAAAAAAA
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