CX069713

Overview
NameCX069713
Unique NameCX069713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1K_HUMAN (Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.395e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.395e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1J_HUMAN (Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.395e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.395e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B11_XENLA (Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.395e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_HOLTU (Histone H2B OS=Holothuria tubulosa PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YN+K TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   74 EASRLAHYNRKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BL4_STRPU (Late histone H2B.L4 (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA+YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   58 EASRLAQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 106          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BE_STRPU (Histone H2B, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   75 ESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BE2_PSAMI (Histone H2B.2, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   74 ESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 145
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124          
The following BLAST results are available for this feature:
BLAST of CX069713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B1K_HUMAN5.395e-1787.76Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK ... [more]
H2B1K_BOVIN5.395e-1787.76Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]
H2B1J_HUMAN5.395e-1787.76Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ ... [more]
H2B12_XENLA5.395e-1787.76Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B11_XENLA5.395e-1787.76Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2[more]
H2B_HOLTU7.046e-1785.71Histone H2B OS=Holothuria tubulosa PE=3 SV=1[more]
H2BL4_STRPU7.046e-1785.71Late histone H2B.L4 (Fragment) OS=Strongylocentrot... [more]
H2BE_STRPU7.046e-1785.71Histone H2B, embryonic OS=Strongylocentrotus purpu... [more]
H2BE2_PSAMI7.046e-1785.71Histone H2B.2, embryonic OS=Psammechinus miliaris ... [more]
H2B1C_HUMAN7.046e-1789.58Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069713 ID=CX069713; Name=CX069713; organism=Citrus sinensis; type=EST; length=384bp
GGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTC
GGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAG
CACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTG
AAGGAAGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTG
TAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGT
TTTGTGTTTTCAAATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACT
AGAAATTTGGACCTGATCCAGGTGATGTGCATGTTCATTATGTTAGAATA
TGAAAATGAAATATGATTTCGGAAAAAAAAAAAA
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