CX069713

Overview
NameCX069713
Unique NameCX069713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_ASPOR (Histone H2B OS=Aspergillus oryzae GN=htb1 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   91 EASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 139          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_ASPNC (Histone H2B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=htb1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   91 EASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 139          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_ASPFU (Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   90 EASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_ASPCL (Histone H2B OS=Aspergillus clavatus GN=htb1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   90 EASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_AJECA (Histone H2B OS=Ajellomyces capsulata GN=HTB1 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   88 EASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 136          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_ACRFO (Histone H2B OS=Acropora formosa PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+SRL+ YNKK TI+SREIQTA+RL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 ESSRLSLYNKKATISSREIQTAIRLLLPGELAKHAVSEGTKAVTKYTSS 124          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BE1_PSAMI (Histone H2B.1, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRL +YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++
Sbjct:   74 EASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTA 122          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_USTMA (Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.567e-16
Identity = 40/49 (81.63%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EAS+LA YNKK TI+SREIQTAVRL+LPGEL+KHA+SEGTK+VTKF+SS
Sbjct:   93 EASKLASYNKKSTISSREIQTAVRLILPGELSKHAISEGTKSVTKFSSS 141          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.965e-16
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 145
            EASRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTKFTS
Sbjct:   71 EASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTKFTS 118          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BS1_STRPU (Histone H2B.1, sperm OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.791e-16
Identity = 39/49 (79.59%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRL +YN++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   91 EASRLTKYNRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 139          
The following BLAST results are available for this feature:
BLAST of CX069713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B_ASPOR3.497e-1683.67Histone H2B OS=Aspergillus oryzae GN=htb1 PE=3 SV=... [more]
H2B_ASPNC3.497e-1683.67Histone H2B OS=Aspergillus niger (strain CBS 513.8... [more]
H2B_ASPFU3.497e-1683.67Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 ... [more]
H2B_ASPCL3.497e-1683.67Histone H2B OS=Aspergillus clavatus GN=htb1 PE=3 S... [more]
H2B_AJECA3.497e-1683.67Histone H2B OS=Ajellomyces capsulata GN=HTB1 PE=3 ... [more]
H2B_ACRFO3.497e-1683.67Histone H2B OS=Acropora formosa PE=3 SV=1[more]
H2BE1_PSAMI3.497e-1683.67Histone H2B.1, embryonic OS=Psammechinus miliaris ... [more]
H2B_USTMA4.567e-1681.63Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3[more]
H2B_PEA5.965e-1687.50Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2BS1_STRPU7.791e-1679.59Histone H2B.1, sperm OS=Strongylocentrotus purpura... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069713 ID=CX069713; Name=CX069713; organism=Citrus sinensis; type=EST; length=384bp
GGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTC
GGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAG
CACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTG
AAGGAAGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTG
TAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGT
TTTGTGTTTTCAAATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACT
AGAAATTTGGACCTGATCCAGGTGATGTGCATGTTCATTATGTTAGAATA
TGAAAATGAAATATGATTTCGGAAAAAAAAAAAA
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