CX069713

Overview
NameCX069713
Unique NameCX069713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BS1_PSAMI (Histone H2B.1, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA RL  YN++ T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   88 EAGRLTTYNRRNTVSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 136          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_CRYNE (Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 37/49 (75.51%), Postives = 46/49 (93.88%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EAS+LA YN + TI+SREIQT+VRL+LPGEL+KHA+SEGTKAVTK++SS
Sbjct:   90 EASKLASYNHRSTISSREIQTSVRLILPGELSKHAISEGTKAVTKYSSS 138          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BS2_LYTPI (Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRL + N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   94 EASRLCQANRRRTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 142          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B_TETPY (Histone H2B OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 35/49 (71.43%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   71 ESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 119          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BS3_PARAN (Histone H2B.3, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:  100 EASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 148          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BS2_PARAN (Histone H2B.2, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   95 EASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 143          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B2_TETTH (Histone H2B.2 OS=Tetrahymena thermophila GN=HTB2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 35/49 (71.43%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   72 ESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 120          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_TETTH (Histone H2B.1 OS=Tetrahymena thermophila GN=HTB1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 35/49 (71.43%), Postives = 47/49 (95.92%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   72 ESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 120          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2BS2_PSAMI (Histone H2B.2, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.506e-14
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*R 154
            EASRL   N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++ R
Sbjct:   93 EASRLTSANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTARR 143          
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B2_PICGU (Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.273e-14
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK++S+
Sbjct:   79 EASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITKYSSA 127          
The following BLAST results are available for this feature:
BLAST of CX069713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2BS1_PSAMI8.614e-1575.51Histone H2B.1, sperm OS=Psammechinus miliaris PE=1... [more]
H2B_CRYNE1.125e-1475.51Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=... [more]
H2BS2_LYTPI1.125e-1479.59Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=... [more]
H2B_TETPY1.919e-1471.43Histone H2B OS=Tetrahymena pyriformis PE=1 SV=2[more]
H2BS3_PARAN1.919e-1477.55Histone H2B.3, sperm OS=Parechinus angulosus PE=1 ... [more]
H2BS2_PARAN1.919e-1477.55Histone H2B.2, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_TETTH1.919e-1471.43Histone H2B.2 OS=Tetrahymena thermophila GN=HTB2 P... [more]
H2B1_TETTH1.919e-1471.43Histone H2B.1 OS=Tetrahymena thermophila GN=HTB1 P... [more]
H2BS2_PSAMI2.506e-1476.47Histone H2B.2, sperm OS=Psammechinus miliaris PE=1... [more]
H2B2_PICGU3.273e-1473.47Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069713 ID=CX069713; Name=CX069713; organism=Citrus sinensis; type=EST; length=384bp
GGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTC
GGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAG
CACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTG
AAGGAAGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTG
TAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGT
TTTGTGTTTTCAAATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACT
AGAAATTTGGACCTGATCCAGGTGATGTGCATGTTCATTATGTTAGAATA
TGAAAATGAAATATGATTTCGGAAAAAAAAAAAA
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