CX069713

Overview
NameCX069713
Unique NameCX069713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   88 ESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  106 EAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   89 EAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 137
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  102 EAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  102 EAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            E+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:  100 ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  102 EAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  104 EAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:  104 EAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:  104 EAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152
The following BLAST results are available for this feature:
BLAST of CX069713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B5_WHEAT7.528e-1993.88Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B5_MAIZE7.528e-1993.88Histone H2B.5 OS=Zea mays PE=2 SV=3[more]
H2B4_MAIZE7.528e-1993.88Histone H2B.4 OS=Zea mays PE=3 SV=3[more]
H2B2_ORYSJ7.528e-1993.88Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI7.528e-1993.88Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B2_MEDTR7.528e-1995.92Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B2_MAIZE7.528e-1993.88Histone H2B.2 OS=Zea mays PE=2 SV=3[more]
H2B1_WHEAT7.528e-1993.88Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B1_ORYSJ7.528e-1993.88Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI7.528e-1993.88Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069713 ID=CX069713; Name=CX069713; organism=Citrus sinensis; type=EST; length=384bp
GGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTC
GGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAG
CACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTG
AAGGAAGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTG
TAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGT
TTTGTGTTTTCAAATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACT
AGAAATTTGGACCTGATCCAGGTGATGTGCATGTTCATTATGTTAGAATA
TGAAAATGAAATATGATTTCGGAAAAAAAAAAAA
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