CX069713

Overview
NameCX069713
Unique NameCX069713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   74 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_PONAB (Histone H2B type 1 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_DANRE (Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   75 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_CHICK (Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1_BOVIN (Histone H2B type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1O_HUMAN (Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1N_BOVIN (Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CX069713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B1_TIGCA2.422e-1789.80Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1_PONAB2.422e-1789.80Histone H2B type 1 OS=Pongo abelii PE=2 SV=3[more]
H2B1_DANRE2.422e-1789.80Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 ... [more]
H2B1_CHICK2.422e-1789.80Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE... [more]
H2B1_BOVIN2.422e-1789.80Histone H2B type 1 OS=Bos taurus PE=1 SV=2[more]
H2B1P_MOUSE2.422e-1789.80Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ... [more]
H2B1O_HUMAN2.422e-1789.80Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO ... [more]
H2B1N_HUMAN2.422e-1789.80Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1N_BOVIN2.422e-1789.80Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE... [more]
H2B1M_MOUSE2.422e-1789.80Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069713 ID=CX069713; Name=CX069713; organism=Citrus sinensis; type=EST; length=384bp
GGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTC
GGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAG
CACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTG
AAGGAAGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTG
TAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGT
TTTGTGTTTTCAAATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACT
AGAAATTTGGACCTGATCCAGGTGATGTGCATGTTCATTATGTTAGAATA
TGAAAATGAAATATGATTTCGGAAAAAAAAAAAA
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