CX069713

Overview
NameCX069713
Unique NameCX069713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1B_HUMAN (Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069713 vs. ExPASy Swiss-Prot
Match: H2B1A_RAT (Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1h2ba PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   78 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126
The following BLAST results are available for this feature:
BLAST of CX069713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B1M_HUMAN2.422e-1789.80Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ... [more]
H2B1L_HUMAN2.422e-1789.80Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
H2B1H_MOUSE2.422e-1789.80Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ... [more]
H2B1H_HUMAN2.422e-1789.80Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ... [more]
H2B1F_MOUSE2.422e-1789.80Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h... [more]
H2B1D_HUMAN2.422e-1789.80Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ... [more]
H2B1C_MOUSE2.422e-1789.80Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h... [more]
H2B1B_MOUSE2.422e-1789.80Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ... [more]
H2B1B_HUMAN2.422e-1789.80Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB ... [more]
H2B1A_RAT2.422e-1789.80Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069713 ID=CX069713; Name=CX069713; organism=Citrus sinensis; type=EST; length=384bp
GGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTC
GGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAG
CACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTG
AAGGAAGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTG
TAGTTAGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGT
TTTGTGTTTTCAAATCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACT
AGAAATTTGGACCTGATCCAGGTGATGTGCATGTTCATTATGTTAGAATA
TGAAAATGAAATATGATTTCGGAAAAAAAAAAAA
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