CX069712

Overview
NameCX069712
Unique NameCX069712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5660 contig Csv1_Contig5660:754..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   90 ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  103 EASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  101 GEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  101 GEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  103 GEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  100 ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  102 EASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            E+SRLARYNKKPTITSREIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   90 ESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   97 ESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  105 EAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
The following BLAST results are available for this feature:
BLAST of CX069712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B3_MEDTR1.505e-1997.96Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B3_ARATH1.505e-1997.96Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]
H2B2_ORYSJ1.505e-1994.00Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI1.505e-1994.00Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_WHEAT1.505e-1994.00Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B1_MEDTR1.505e-1997.96Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B11_ARATH1.505e-1997.96Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B8_ARATH3.353e-1995.92Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650... [more]
H2B7_ARATH3.353e-1995.92Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ORYSJ3.353e-1995.92Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069712 ID=CX069712; Name=CX069712; organism=Citrus sinensis; type=EST; length=388bp
TTTTTTTTTTTTTCCGAAATCACATTTCATTTTCATATTCTAACATAATG
AACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAACAA
ACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTT
CATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAAC
ACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAAC
TTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACC
AGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCG
GCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCCCT
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