CX069712

Overview
NameCX069712
Unique NameCX069712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5660 contig Csv1_Contig5660:754..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1N_BOVIN (Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1B_HUMAN (Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1A_RAT (Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1h2ba PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   77 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126
The following BLAST results are available for this feature:
BLAST of CX069712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B1N_HUMAN4.842e-1890.00Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1N_BOVIN4.842e-1890.00Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE... [more]
H2B1M_MOUSE4.842e-1890.00Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]
H2B1M_HUMAN4.842e-1890.00Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ... [more]
H2B1H_MOUSE4.842e-1890.00Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ... [more]
H2B1H_HUMAN4.842e-1890.00Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ... [more]
H2B1D_HUMAN4.842e-1890.00Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ... [more]
H2B1C_MOUSE4.842e-1890.00Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h... [more]
H2B1B_HUMAN4.842e-1890.00Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB ... [more]
H2B1A_RAT4.842e-1890.00Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069712 ID=CX069712; Name=CX069712; organism=Citrus sinensis; type=EST; length=388bp
TTTTTTTTTTTTTCCGAAATCACATTTCATTTTCATATTCTAACATAATG
AACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAACAA
ACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTT
CATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAAC
ACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAAC
TTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACC
AGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCG
GCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCCCT
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